Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 91.14 | 86.54 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 87.59 | 84.23 |
| Os01t0758900-01 | Rice | nucleus | 62.92 | 62.46 |
| Zm00001d043395_P002 | Maize | nucleus | 60.27 | 60.0 |
| EES01501 | Sorghum | nucleus | 58.05 | 57.12 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 24.52 | 31.86 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 29.99 | 30.53 |
| Solyc07g055140.2.1 | Tomato | nucleus | 15.36 | 29.55 |
| KRH22276 | Soybean | nucleus | 6.94 | 28.31 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 27.18 | 28.05 |
| KRH74883 | Soybean | nucleus | 11.82 | 25.81 |
| KRH04495 | Soybean | nucleus | 11.67 | 25.32 |
| Bra021994.1-P | Field mustard | nucleus | 14.92 | 24.57 |
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 16.54 | 24.56 |
| Bra030129.1-P | Field mustard | mitochondrion, nucleus, plastid | 17.58 | 24.49 |
| CDY43328 | Canola | nucleus | 18.46 | 24.46 |
| CDX94655 | Canola | mitochondrion | 17.43 | 24.28 |
| CDX90178 | Canola | nucleus | 18.02 | 23.97 |
| VIT_12s0028g02110.t01 | Wine grape | nucleus | 23.78 | 23.75 |
| Bra010842.1-P | Field mustard | nucleus | 18.17 | 23.56 |
| CDY06031 | Canola | nucleus | 15.07 | 23.34 |
| AT2G30990.4 | Thale cress | nucleus | 20.24 | 23.1 |
| AT1G29240.1 | Thale cress | nucleus | 19.5 | 22.88 |
| PGSC0003DMT400052652 | Potato | nucleus | 19.79 | 22.79 |
| KRH11026 | Soybean | nucleus | 22.75 | 22.75 |
| AT2G34170.3 | Thale cress | nucleus | 17.43 | 22.56 |
| CDY63140 | Canola | nucleus | 16.25 | 22.49 |
| CDY58982 | Canola | nucleus | 17.73 | 22.43 |
| CDY52694 | Canola | nucleus | 15.51 | 22.34 |
| CDY17227 | Canola | nucleus | 16.1 | 22.24 |
| Bra021686.1-P | Field mustard | nucleus | 17.43 | 22.06 |
| CDX87761 | Canola | nucleus | 14.03 | 21.94 |
| CDX99449 | Canola | nucleus | 15.21 | 21.82 |
| PGSC0003DMT400026504 | Potato | nucleus | 22.16 | 21.61 |
| CDY01559 | Canola | nucleus, plastid | 14.18 | 21.52 |
| KRH58978 | Soybean | nucleus | 21.27 | 21.52 |
| PGSC0003DMT400039770 | Potato | cytosol | 18.17 | 21.47 |
| Solyc02g076680.2.1 | Tomato | nucleus | 22.01 | 21.44 |
| CDY53997 | Canola | plastid | 13.29 | 21.38 |
| AT4G18630.1 | Thale cress | nucleus | 14.92 | 21.09 |
| KRH27055 | Soybean | nucleus | 17.43 | 21.03 |
| CDX78880 | Canola | nucleus | 14.77 | 20.96 |
| CDY10767 | Canola | nucleus | 13.15 | 20.89 |
| KRH42875 | Soybean | nucleus | 20.83 | 20.89 |
| Solyc12g013960.1.1 | Tomato | nucleus | 18.76 | 20.68 |
| Bra013335.1-P | Field mustard | nucleus | 14.48 | 20.63 |
| CDX97772 | Canola | extracellular, vacuole | 16.99 | 20.57 |
| Bra005448.1-P | Field mustard | nucleus | 15.95 | 20.49 |
| Bra012583.1-P | Field mustard | plastid | 13.59 | 20.35 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 11.67 | 19.95 |
| KRH55736 | Soybean | nucleus | 20.09 | 19.8 |
| KRH25783 | Soybean | nucleus | 20.53 | 19.66 |
| AT5G45850.1 | Thale cress | nucleus | 12.26 | 18.65 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 21.57 | 18.43 |
| Bra018284.1-P | Field mustard | nucleus | 13.0 | 18.11 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G295500.1 | EnsemblPlantsGene:TraesCS3D01G295500 | InterPro:DUF688 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF5 | PFAM:PF05097 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:408315060..408317291
Molecular Weight (calculated)
73657.6 Da
IEP (calculated)
6.988
GRAVY (calculated)
-0.816
Length
677 amino acids
Sequence
(BLAST)
(BLAST)
001: MRADRVMAEG AKRIDLAAPL RSARLPYHKA DLNSGPVRHP GAVPFVWEQS PGQPKSVRTR RPPPSSPSQP RPEDNGANPY HDALGECERD RALPNGAAPA
101: PAAVPRTGAA EREAERAEVE PRKEATTPDV LSVADVLRKE EEDVGDDDER FSDALDTLSR TESFTVNCSV SGLSGVPDRP AGAAATSAEP GARGFMMDRF
201: LPAAQAVAVG SPQYTFRKAS VAGSTGNSAR EHAHAAAANW RMGSDDDRVR RTPVQLPYQH LPPNYLSCNY PRRDDHEEEE EEEDDDDFDV HSTRGFASKG
301: CGLLPGLCVK TSLLLLNPMP IMKGGKARQG GRGRGLASKG RGQKAPSPLA RSSQRKNLGC DSNGQYWEEV YKHKLEQKYI NQGEDRRSKL TSESNHLTFW
401: SDSQTGDGSS PFRHSIGGGM SPYRRDVALS PSRKANGSLE VRDKDEKMSR SNGSSSLGID HDHGSLLGSD HSSLKGSSSM SSGVDRTLHE DSMDHRSGID
501: SEASQLTLPL DPKASLNSGC DVQHGGHQIV RSNSIVEVQD NDMLTKTIAK VPESISLIPS GNAGSVKLDD RKTHDSSQDV PVHSEDNIAV KKESMPLQFL
601: MPLPVPKSPS DSWLSRNLPS VKNKPPAPSF LGIQVQSKKQ APWASTHPKE NDLKPPRTRQ IRFADVVERP YYLDTEI
101: PAAVPRTGAA EREAERAEVE PRKEATTPDV LSVADVLRKE EEDVGDDDER FSDALDTLSR TESFTVNCSV SGLSGVPDRP AGAAATSAEP GARGFMMDRF
201: LPAAQAVAVG SPQYTFRKAS VAGSTGNSAR EHAHAAAANW RMGSDDDRVR RTPVQLPYQH LPPNYLSCNY PRRDDHEEEE EEEDDDDFDV HSTRGFASKG
301: CGLLPGLCVK TSLLLLNPMP IMKGGKARQG GRGRGLASKG RGQKAPSPLA RSSQRKNLGC DSNGQYWEEV YKHKLEQKYI NQGEDRRSKL TSESNHLTFW
401: SDSQTGDGSS PFRHSIGGGM SPYRRDVALS PSRKANGSLE VRDKDEKMSR SNGSSSLGID HDHGSLLGSD HSSLKGSSSM SSGVDRTLHE DSMDHRSGID
501: SEASQLTLPL DPKASLNSGC DVQHGGHQIV RSNSIVEVQD NDMLTKTIAK VPESISLIPS GNAGSVKLDD RKTHDSSQDV PVHSEDNIAV KKESMPLQFL
601: MPLPVPKSPS DSWLSRNLPS VKNKPPAPSF LGIQVQSKKQ APWASTHPKE NDLKPPRTRQ IRFADVVERP YYLDTEI
001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
Arabidopsis Description
F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.