Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 5
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29240.1 | CDX67837 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDX71796 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDX89063 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDY41153 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDY48365 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 85.19 | 90.79 |
| CDY43328 | Canola | nucleus | 64.2 | 61.06 |
| CDX90178 | Canola | nucleus | 63.79 | 60.9 |
| AT1G29240.1 | Thale cress | nucleus | 59.47 | 50.09 |
| CDY63140 | Canola | nucleus | 46.3 | 46.01 |
| CDY17227 | Canola | nucleus | 45.47 | 45.1 |
| CDX99449 | Canola | nucleus | 24.69 | 25.42 |
| CDX78880 | Canola | nucleus | 24.69 | 25.16 |
| CDY01559 | Canola | nucleus, plastid | 23.05 | 25.11 |
| CDY06031 | Canola | nucleus | 21.6 | 24.03 |
| KRH58978 | Soybean | nucleus | 32.72 | 23.77 |
| KRH11026 | Soybean | nucleus | 32.92 | 23.63 |
| KRH42875 | Soybean | nucleus | 31.89 | 22.96 |
| CDX87761 | Canola | nucleus | 20.37 | 22.86 |
| CDY53997 | Canola | plastid | 18.93 | 21.85 |
| PGSC0003DMT400026504 | Potato | nucleus | 30.45 | 21.33 |
| Solyc02g076680.2.1 | Tomato | nucleus | 30.45 | 21.3 |
| CDY58982 | Canola | nucleus | 22.43 | 20.37 |
| CDY52694 | Canola | nucleus | 19.55 | 20.21 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 32.72 | 20.08 |
| CDX97772 | Canola | extracellular, vacuole | 23.05 | 20.04 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 20.99 | 19.58 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 15.84 | 19.44 |
| CDY10767 | Canola | nucleus | 16.67 | 19.01 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 25.31 | 18.75 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 25.1 | 18.35 |
| Zm00001d043395_P002 | Maize | nucleus | 24.49 | 17.5 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 24.28 | 17.43 |
| Os01t0758900-01 | Rice | nucleus | 23.87 | 17.01 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 24.49 | 16.69 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 24.07 | 16.62 |
| EES01501 | Sorghum | nucleus | 23.25 | 16.42 |
Protein Annotations
| EnsemblPlants:CDX94655 | EnsemblPlantsGene:GSBRNA2T00157987001 | InterPro:DUF688 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF3 | PFAM:PF05097 |
| ProteinID:CDX94655 | ProteinID:CDX94655.1 | SEG:seg | UniParc:UPI0004EDFE9E | MapMan:35.2 | : |
Description
BnaC07g10030D
Coordinates
chrLK031883:+:791704..793399
Molecular Weight (calculated)
55146.3 Da
IEP (calculated)
8.552
GRAVY (calculated)
-0.855
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERRLNFKA PLLSTRRLHN TAVSVRRNKS INFTHDSKTS ELGLDQVTEA ASVPFTWEQS PGRLKGHDSK PQQVSDQVFT PCLPPGNLSF RVKHVEEEEE
101: EDVFSDARDT YSYFSANHSI TGVSGYSVVE TKNPSEDHQS RDFMLNRFLP AAKAMTVEQP HYGSNRKPST FMPEPTIQKR DLVPDEKRQT RNRYDKSTLL
201: PYYDHHQGVD NEESVEEDDD EVSEYAYLSR RGCGMFPQLC FKESVAMLST GFQSKQNSPS HDQVKSSKVS QLKSRFQSIK QLALDSVSKH KLGGKVLSPV
301: HPNLSSAASM SSSPYRHTRC MSPFRNGSPF HPDTRKETES LRANRLNKHI SNISNASASS LLEKTVYVDT EDSPKTNIKI FPEEVEKKPD TNLELEELGK
401: INSSPGRSLL APPLPNKPSE SWLLHNLPSV VNSQTSSRRY TFHPKKESFN ENSISVTKWE TIVKTSYMHR DHIRYSEELV AHTSLK
101: EDVFSDARDT YSYFSANHSI TGVSGYSVVE TKNPSEDHQS RDFMLNRFLP AAKAMTVEQP HYGSNRKPST FMPEPTIQKR DLVPDEKRQT RNRYDKSTLL
201: PYYDHHQGVD NEESVEEDDD EVSEYAYLSR RGCGMFPQLC FKESVAMLST GFQSKQNSPS HDQVKSSKVS QLKSRFQSIK QLALDSVSKH KLGGKVLSPV
301: HPNLSSAASM SSSPYRHTRC MSPFRNGSPF HPDTRKETES LRANRLNKHI SNISNASASS LLEKTVYVDT EDSPKTNIKI FPEEVEKKPD TNLELEELGK
401: INSSPGRSLL APPLPNKPSE SWLLHNLPSV VNSQTSSRRY TFHPKKESFN ENSISVTKWE TIVKTSYMHR DHIRYSEELV AHTSLK
001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
Arabidopsis Description
F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.