Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 4
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29240.1 | CDX67837 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDX71796 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDX89063 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDY41153 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDY48365 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030129.1-P | Field mustard | mitochondrion, nucleus, plastid | 98.9 | 92.8 |
| CDX94655 | Canola | mitochondrion | 90.79 | 85.19 |
| CDX90178 | Canola | nucleus | 64.69 | 57.96 |
| CDY43328 | Canola | nucleus | 64.69 | 57.73 |
| AT1G29240.1 | Thale cress | nucleus | 58.77 | 46.45 |
| CDY63140 | Canola | nucleus | 46.27 | 43.15 |
| CDY17227 | Canola | nucleus | 45.18 | 42.04 |
| CDX78880 | Canola | nucleus | 25.66 | 24.53 |
| CDX99449 | Canola | nucleus | 25.22 | 24.36 |
| CDY01559 | Canola | nucleus, plastid | 23.46 | 23.99 |
| KRH58978 | Soybean | nucleus | 32.89 | 22.42 |
| CDY06031 | Canola | nucleus | 21.05 | 21.97 |
| KRH11026 | Soybean | nucleus | 32.46 | 21.86 |
| CDX87761 | Canola | nucleus | 20.61 | 21.71 |
| KRH42875 | Soybean | nucleus | 32.02 | 21.63 |
| CDY53997 | Canola | plastid | 19.08 | 20.67 |
| CDY52694 | Canola | nucleus | 20.61 | 20.0 |
| PGSC0003DMT400026504 | Potato | nucleus | 30.26 | 19.88 |
| Solyc02g076680.2.1 | Tomato | nucleus | 30.26 | 19.86 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 33.77 | 19.44 |
| CDY58982 | Canola | nucleus | 22.81 | 19.44 |
| CDY10767 | Canola | nucleus | 17.76 | 19.01 |
| CDX97772 | Canola | extracellular, vacuole | 23.25 | 18.96 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 21.49 | 18.81 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 26.32 | 18.05 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 25.22 | 17.53 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 15.13 | 17.42 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 24.56 | 16.54 |
| Zm00001d043395_P002 | Maize | nucleus | 24.12 | 16.18 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 24.78 | 16.05 |
| Os01t0758900-01 | Rice | nucleus | 23.9 | 15.98 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 24.78 | 15.85 |
| EES01501 | Sorghum | nucleus | 23.9 | 15.84 |
Protein Annotations
| EnsemblPlants:CDY15640 | EnsemblPlantsGene:GSBRNA2T00089836001 | InterPro:DUF688 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF3 | PFAM:PF05097 |
| ProteinID:CDY15640 | ProteinID:CDY15640.1 | SEG:seg | UniParc:UPI0004EE7643 | UniProt:A0A078FMH2 | MapMan:35.2 |
Description
BnaA07g08110DBnaA07g08110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMH2]
Coordinates
chrLK032056:-:88317..90029
Molecular Weight (calculated)
51748.4 Da
IEP (calculated)
8.965
GRAVY (calculated)
-0.873
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERRLNFKA PLLSTRRMHN TAVSVRRNKS NNNFTLDSKT SEMGLDQVTE AASVPFTWKQ SPGRLKGHDS SPQKVCDQVV TPCLPPGNLS FRAKQVEEDS
101: EDVFSDAHDT HSYFSPNHSI TGVSGYSVVE TKNLSEDPQS RDFMLNRFLP AAKAMTVEQP HYGSNRKPSS FMSEPTIQIR DSVPEEKRKT PNRYDKSTLS
201: PYYDHHQDID NEESVEEEDD EVSEYAYLSR RGCVKSSKVS QLKSRFQSIK QLALDSVSKH KLGGKVLSPV HPNLTSSASM SSSPYRHTKC MSPFRNGSPF
301: HRDTRKETES LRANRLNKHI SNISNASASS LLEKTVYVDT EDSPKTNIMI FPEEVEKKPD TNLELEELRK INSSPGRSLL APPLPKKPSE SWLLHNLPSV
401: VNSQTSSRRY TFHPKKESFN ENSISVTKWE TIVKTSYMHR DHIRYSEELV AHTSLQ
101: EDVFSDAHDT HSYFSPNHSI TGVSGYSVVE TKNLSEDPQS RDFMLNRFLP AAKAMTVEQP HYGSNRKPSS FMSEPTIQIR DSVPEEKRKT PNRYDKSTLS
201: PYYDHHQDID NEESVEEEDD EVSEYAYLSR RGCVKSSKVS QLKSRFQSIK QLALDSVSKH KLGGKVLSPV HPNLTSSASM SSSPYRHTKC MSPFRNGSPF
301: HRDTRKETES LRANRLNKHI SNISNASASS LLEKTVYVDT EDSPKTNIMI FPEEVEKKPD TNLELEELRK INSSPGRSLL APPLPKKPSE SWLLHNLPSV
401: VNSQTSSRRY TFHPKKESFN ENSISVTKWE TIVKTSYMHR DHIRYSEELV AHTSLQ
001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
Arabidopsis Description
F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.