Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29240.1 | CDX67837 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDX71796 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDX89063 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDY41153 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDY48365 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43328 | Canola | nucleus | 89.98 | 89.63 |
| Bra010842.1-P | Field mustard | nucleus | 87.82 | 85.63 |
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 57.96 | 64.69 |
| CDX94655 | Canola | mitochondrion | 60.9 | 63.79 |
| AT1G29240.1 | Thale cress | nucleus | 66.8 | 58.93 |
| CDY63140 | Canola | nucleus | 44.99 | 46.83 |
| CDY17227 | Canola | nucleus | 43.42 | 45.1 |
| CDY01559 | Canola | nucleus, plastid | 24.56 | 28.03 |
| CDX99449 | Canola | nucleus | 24.75 | 26.69 |
| CDX78880 | Canola | nucleus | 24.95 | 26.62 |
| KRH58978 | Soybean | nucleus | 33.6 | 25.56 |
| KRH11026 | Soybean | nucleus | 33.4 | 25.11 |
| CDY06031 | Canola | nucleus | 21.41 | 24.94 |
| KRH42875 | Soybean | nucleus | 32.81 | 24.74 |
| CDX87761 | Canola | nucleus | 20.63 | 24.25 |
| CDY53997 | Canola | plastid | 20.04 | 24.23 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 17.49 | 22.47 |
| CDY52694 | Canola | nucleus | 20.24 | 21.91 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 22.4 | 21.88 |
| CDY58982 | Canola | nucleus | 22.79 | 21.68 |
| Solyc02g076680.2.1 | Tomato | nucleus | 29.27 | 21.44 |
| PGSC0003DMT400026504 | Potato | nucleus | 28.88 | 21.18 |
| CDY10767 | Canola | nucleus | 17.49 | 20.89 |
| CDX97772 | Canola | extracellular, vacuole | 22.79 | 20.75 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 31.83 | 20.45 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 24.75 | 19.21 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 24.95 | 19.1 |
| EES01501 | Sorghum | nucleus | 24.36 | 18.02 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 23.97 | 18.02 |
| Zm00001d043395_P002 | Maize | nucleus | 23.97 | 17.94 |
| Os01t0758900-01 | Rice | nucleus | 23.97 | 17.89 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 24.16 | 17.47 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 23.97 | 17.11 |
Protein Annotations
| EnsemblPlants:CDX90178 | EnsemblPlantsGene:GSBRNA2T00150725001 | InterPro:DUF688 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF3 | PFAM:PF05097 |
| ProteinID:CDX90178 | ProteinID:CDX90178.1 | SEG:seg | UniParc:UPI0004EDB13E | MapMan:35.2 | : |
Description
BnaA08g18060D
Coordinates
chrLK031862:+:487538..489383
Molecular Weight (calculated)
57647.5 Da
IEP (calculated)
7.576
GRAVY (calculated)
-0.840
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERKLNLEA PLLSTRRMQK TSAVSVRRNK TFDFTHDDTS SVPVLVPDMG LDHFTESASV PFTWEQAPGR LKGNDSTTTH EVFTPCLPPG KAIDRNLSSK
101: TKQVDEEEES EDVFSDARDT LSPKDSFSVN QSISGVSGYG VVAEMKKTLN PCEDPQSRDF MLNRFLPAAK AMTVEQSHYA LNRKPSSCMS EPTLQIRELV
201: PEEKRQTSKR YDESLVLPCY DHQYIDDEES EEGDDEVSEY AYLPRRGCGM LPQLCFKESL GMLNTVPGFK TKRNDQVKSS KVSQLKSRFQ SVKQLALDSV
301: SKQKLSGKVQ SPVHPSMGKK FNSESNLSCA ASRSSSPYRH PRCMSPFRTA NTTCFPDTRK ETENLRANRL NKHIRNISSS QDLLYPKDNG STSSLLEKAV
401: YVDMEEAEKK PDTNLEHEDF ENISIKSGKD RSPLAPPSPK KPSESWLWHN LPSVNSQIHS RGYRFNPQKQ DVSENFRSVS KWETIVKTSY MHRDHIRFSE
501: ELVAHTSLP
101: TKQVDEEEES EDVFSDARDT LSPKDSFSVN QSISGVSGYG VVAEMKKTLN PCEDPQSRDF MLNRFLPAAK AMTVEQSHYA LNRKPSSCMS EPTLQIRELV
201: PEEKRQTSKR YDESLVLPCY DHQYIDDEES EEGDDEVSEY AYLPRRGCGM LPQLCFKESL GMLNTVPGFK TKRNDQVKSS KVSQLKSRFQ SVKQLALDSV
301: SKQKLSGKVQ SPVHPSMGKK FNSESNLSCA ASRSSSPYRH PRCMSPFRTA NTTCFPDTRK ETENLRANRL NKHIRNISSS QDLLYPKDNG STSSLLEKAV
401: YVDMEEAEKK PDTNLEHEDF ENISIKSGKD RSPLAPPSPK KPSESWLWHN LPSVNSQIHS RGYRFNPQKQ DVSENFRSVS KWETIVKTSY MHRDHIRFSE
501: ELVAHTSLP
001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
Arabidopsis Description
F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.