Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78880 | Canola | nucleus | 93.01 | 92.03 |
| CDY01559 | Canola | nucleus, plastid | 70.13 | 74.22 |
| AT4G18630.1 | Thale cress | nucleus | 74.36 | 73.28 |
| CDY53997 | Canola | plastid | 62.92 | 70.55 |
| CDY06031 | Canola | nucleus | 30.51 | 32.95 |
| CDX87761 | Canola | nucleus | 29.45 | 32.1 |
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 24.36 | 25.22 |
| CDX90178 | Canola | nucleus | 26.69 | 24.75 |
| CDX94655 | Canola | mitochondrion | 25.42 | 24.69 |
| CDY43328 | Canola | nucleus | 26.48 | 24.46 |
| CDY63140 | Canola | nucleus | 21.61 | 20.86 |
| CDY17227 | Canola | nucleus | 21.61 | 20.82 |
| CDY10767 | Canola | nucleus | 17.8 | 19.72 |
| CDY58982 | Canola | nucleus | 21.61 | 19.07 |
| CDY52694 | Canola | nucleus | 18.86 | 18.94 |
| KRH58978 | Soybean | nucleus | 26.69 | 18.83 |
| KRH42875 | Soybean | nucleus | 26.91 | 18.81 |
| KRH11026 | Soybean | nucleus | 26.27 | 18.32 |
| CDX97772 | Canola | extracellular, vacuole | 21.4 | 18.07 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 19.28 | 17.47 |
| PGSC0003DMT400026504 | Potato | nucleus | 25.42 | 17.29 |
| Solyc02g076680.2.1 | Tomato | nucleus | 25.0 | 16.98 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 23.73 | 16.84 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 23.31 | 16.77 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 26.69 | 15.91 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 13.14 | 15.66 |
| Os01t0758900-01 | Rice | nucleus | 22.46 | 15.54 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 21.82 | 15.21 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 21.61 | 14.49 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 21.82 | 14.45 |
| Zm00001d043395_P002 | Maize | nucleus | 20.55 | 14.26 |
| EES01501 | Sorghum | nucleus | 20.76 | 14.24 |
Protein Annotations
| EnsemblPlants:CDX99449 | EnsemblPlantsGene:GSBRNA2T00107786001 | InterPro:DUF688 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF3 | PFAM:PF05097 |
| ProteinID:CDX99449 | ProteinID:CDX99449.1 | SEG:seg | UniParc:UPI0004EB9DA0 | MapMan:35.2 | : |
Description
BnaC01g11030D
Coordinates
chrLK031910:-:718954..720661
Molecular Weight (calculated)
53375.2 Da
IEP (calculated)
6.215
GRAVY (calculated)
-0.857
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKKLNLYA PLPSIRRMSS KKEHSGESEN KKTVITRPEP SKEQETPAFV LPDQSFDHLT EPASVPFVWE QIPGKPKDDM ATLIQESGLL ETDDEDEDED
101: EEEDTVSSTG SFSVNCSTSG VSDIEMNGER SEDVSSRESL DLMMSRFLPA AKAMAFTHQK HQSPSSYNSS EQKQTVQNRE ALGVRQRRQL VAEHEHFAIV
201: QSLYDDLNIE DDDESEDDDD DDHRILPEVT IKKACGFLPR LCARNSFKFS NPVPLDTKLN RNLKHSGEQT GIPNWSTRRL SGFISPYRTS CSETGFVGAP
301: VKPESFKRLN RGISKSQELY PPRTRREILP NYSHSGEIRV FRNSTSTPSR IQRTTTMHDS RFLVEEVNRR KSSSINRSGS LLKTSPEYTA AAISPPPLPE
401: TPSRSWLRRT LLPPVSPKPY GVALGQVGTK KLDQEILEST KWETIVKTSY VHNDHVRYSQ ELVVHPSRQQ NT
101: EEEDTVSSTG SFSVNCSTSG VSDIEMNGER SEDVSSRESL DLMMSRFLPA AKAMAFTHQK HQSPSSYNSS EQKQTVQNRE ALGVRQRRQL VAEHEHFAIV
201: QSLYDDLNIE DDDESEDDDD DDHRILPEVT IKKACGFLPR LCARNSFKFS NPVPLDTKLN RNLKHSGEQT GIPNWSTRRL SGFISPYRTS CSETGFVGAP
301: VKPESFKRLN RGISKSQELY PPRTRREILP NYSHSGEIRV FRNSTSTPSR IQRTTTMHDS RFLVEEVNRR KSSSINRSGS LLKTSPEYTA AAISPPPLPE
401: TPSRSWLRRT LLPPVSPKPY GVALGQVGTK KLDQEILEST KWETIVKTSY VHNDHVRYSQ ELVVHPSRQQ NT
001: MEGKKLNLYA PLPSIRRIPS MIERSSELEN KKTTITRPEL RSCPSTKQET PVFVLPDQSF DHLTEPASIP FMWEQIPGKP KDDMATLIQE SGLLETDDEE
101: EDEVDEDLDT VSSNVSFSVN CSTSGVSEIE KTGERSDCDE KSRESLDLMM SRFLPAAKAM ALQTHQKHQS SYNSSEQKLI TQNREALVAR QRSQLVAEHE
201: HFAIVQSLYD DLNIDDDTED DENDDDGDDY GHVDHKIYPA EVTKKACGFL PRLCAKNSFK FLNPVPLDSV SNRSMKHSGD QTSLPNWSTR RLSGFISPYR
301: TSCSDSGFLG TPEKPESFKR LNRGISKSQE LYPTRTRREV LPNYSNSGEI KMFRNSISTP SRIQRTTIHD SRFLVEEVNR RRNNKSGNLQ QTSSEYTPAL
401: SPPPLPETPS RSWLGRTLLP PVNPRPYGVV LGQVGIKKLN QEVLESTKWE TIVKTSYVHN DHARYSQELI VYPSRQQNT
101: EDEVDEDLDT VSSNVSFSVN CSTSGVSEIE KTGERSDCDE KSRESLDLMM SRFLPAAKAM ALQTHQKHQS SYNSSEQKLI TQNREALVAR QRSQLVAEHE
201: HFAIVQSLYD DLNIDDDTED DENDDDGDDY GHVDHKIYPA EVTKKACGFL PRLCAKNSFK FLNPVPLDSV SNRSMKHSGD QTSLPNWSTR RLSGFISPYR
301: TSCSDSGFLG TPEKPESFKR LNRGISKSQE LYPTRTRREV LPNYSNSGEI KMFRNSISTP SRIQRTTIHD SRFLVEEVNR RRNNKSGNLQ QTSSEYTPAL
401: SPPPLPETPS RSWLGRTLLP PVNPRPYGVV LGQVGIKKLN QEVLESTKWE TIVKTSYVHN DHARYSQELI VYPSRQQNT
Arabidopsis Description
Uncharacterized protein At4g18630 [Source:UniProtKB/TrEMBL;Acc:Q8GYP4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.