CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021994.1-P	Field mustard	nucleus	83.83	88.32
CDY06031	Canola	nucleus	84.06	83.3
AT5G45850.1	Thale cress	nucleus	57.04	55.51
CDY01559	Canola	nucleus, plastid	32.79	31.84
CDX78880	Canola	nucleus	33.49	30.4
CDX99449	Canola	nucleus	32.1	29.45
CDY53997	Canola	plastid	27.02	27.79
CDY10767	Canola	nucleus	21.02	21.36
CDY43328	Canola	nucleus	24.48	20.74
CDX90178	Canola	nucleus	24.25	20.63
CDY15640	Canola	mitochondrion, nucleus, plastid	21.71	20.61
CDY52694	Canola	nucleus	22.17	20.43
CDX94655	Canola	mitochondrion	22.86	20.37
CDY63140	Canola	nucleus	21.94	19.43
CDY17227	Canola	nucleus	21.02	18.57
CDY58982	Canola	nucleus	21.94	17.76
CDX97772	Canola	extracellular, vacuole	22.17	17.17
KRH11026	Soybean	nucleus	25.4	16.25
KRH42875	Soybean	nucleus	24.25	15.56
KRH58978	Soybean	nucleus	23.79	15.4
Solyc02g076680.2.1	Tomato	nucleus	24.48	15.25
GSMUA_Achr6P26820_001	Banana	nucleus	23.09	15.24
GSMUA_Achr1P04800_001	Banana	nucleus	18.24	15.16
PGSC0003DMT400026504	Potato	nucleus	24.02	14.99
GSMUA_Achr9P06400_001	Banana	nucleus	22.63	14.74
VIT_10s0003g01370.t01	Wine grape	plastid	26.56	14.52
TraesCS3D01G295500.1	Wheat	nucleus	21.94	14.03
Os01t0758900-01	Rice	nucleus	21.71	13.78
TraesCS3A01G306400.2	Wheat	nucleus	22.17	13.64
KRH21261	Soybean	cytosol, mitochondrion, plastid	12.24	13.38
Zm00001d043395_P002	Maize	nucleus	21.02	13.38
EES01501	Sorghum	nucleus	21.02	13.23
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	21.71	13.18

Protein Annotations

EnsemblPlants:CDX87761	EnsemblPlantsGene:GSBRNA2T00146834001	InterPro:DUF688	PANTHER:PTHR33671	PANTHER:PTHR33671:SF3	PFAM:PF05097
ProteinID:CDX87761	ProteinID:CDX87761.1	SEG:seg	UniParc:UPI0004EB5E7F	MapMan:35.2	:

Description

BnaC02g31880D

Coordinates

chrLK031851:+:1062042..1063427

Molecular Weight (calculated)

49202.2 Da

IEP (calculated)

10.442

GRAVY (calculated)

-0.746

Length

433 amino acids

Sequence
(BLAST)

001: MLQRYVRIFL SEETMEEKKP NLDAPFLSVR RIPTKLENPI DSENTKKKTT TTRRRKVKDS CQETEHGTMV RLLQDDKSFD HVMEPSLVPL GKPKDHHTLL
101: QESDLIKALD MVSSTASFSV NCSTNGVSDE FENNGGRPSS VSKDDVNLEY RDLIMARFLP AAKAIALKQK KGSFRDQEEK MMKKKKKKRI IALQRVSMAI
201: NQDLNNDDYG HDHVEEAVHS SEAKKAMFGF LPQLCSKNSL DVLNPVLFRI KTCQNVAVSC SKIINPKTQD SVYKTKPASS TIIVRSNKAM SKSQETCPIP
301: RFSEKLSTTS RLQRTSSTQI KRQDTRFLSE GVKRMRNRNK NRSGNISVSQ PPLPKTPSES WLCRTLPRSS TVSTVVPGQL PVLLSGQDTG LRKMMDQKSI
401: KWETIVKTSY KHHDNVRYSE ELTVVHPSRQ HKP

Best Arabidopsis Sequence Match ( AT5G45850.1 )
(BLAST)

001: MEEKKLNLDA PFLSVRRVPT KPDDPNESEN TKKKTMTTRR REIKDSCQET ENEILIRLLQ DQSFEHVMEP SSVPFKWEQT PGKPKDKKNL VEESDLIKAM
101: EMVSSTASFS VNCSSSGVSE FENNGDGDRS SNVSRDDVIL EYRDLIMSRF LPAAEAISLK MKKEASRVKA EKKKKQSIAL QRVSMAINQD LNNDVDDEEH
201: CDHNHVDGID ALVYSNDSKK GQLGFLPWFC SKNSVDVLTP VLSRIKTCQD VGVKSENIIN PKSIDSVYKT KSTSPRIFKS SKVMSKSQEI DATPRFSNDI
301: SRISLPKSRE TLQIPRNHSR LQQTTDQNQR QEIRFLVEEV KRRSNRNKNR SENLSVSQPP LPKTPSESWL CRTLPRSSTT SSVVSGQFAV VVSGQAARFK
401: KNMEKKTDSQ SKKWETIVKT SYSHHDHVRY SEGLIVVHPT RQHKF

Arabidopsis Description

Protein of unknown function (DUF688) [Source:TAIR;Acc:AT5G45850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.