Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021994.1-P | Field mustard | nucleus | 55.06 | 59.61 |
| CDX87761 | Canola | nucleus | 55.51 | 57.04 |
| CDY06031 | Canola | nucleus | 53.48 | 54.46 |
| AT4G18630.1 | Thale cress | nucleus | 34.61 | 32.15 |
| AT2G34170.3 | Thale cress | nucleus | 22.25 | 18.93 |
| AT1G29240.1 | Thale cress | nucleus | 24.27 | 18.72 |
| KRH11026 | Soybean | nucleus | 27.42 | 18.02 |
| KRH42875 | Soybean | nucleus | 27.19 | 17.93 |
| AT2G30990.4 | Thale cress | nucleus | 23.82 | 17.88 |
| KRH58978 | Soybean | nucleus | 26.52 | 17.64 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 20.0 | 17.08 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 28.31 | 15.91 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 23.37 | 15.85 |
| PGSC0003DMT400026504 | Potato | nucleus | 24.72 | 15.85 |
| Solyc02g076680.2.1 | Tomato | nucleus | 24.72 | 15.83 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 23.15 | 15.49 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 11.91 | 13.38 |
| Os01t0758900-01 | Rice | nucleus | 19.33 | 12.61 |
| EES01501 | Sorghum | nucleus | 19.1 | 12.35 |
| Zm00001d043395_P002 | Maize | nucleus | 18.88 | 12.35 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 18.65 | 12.26 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 19.1 | 12.07 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 18.88 | 11.78 |
Protein Annotations
| MapMan:35.2 | EntrezGene:834625 | ProteinID:AED95307.1 | ArrayExpress:AT5G45850 | EnsemblPlantsGene:AT5G45850 | RefSeq:AT5G45850 |
| TAIR:AT5G45850 | RefSeq:AT5G45850-TAIR-G | EnsemblPlants:AT5G45850.1 | TAIR:AT5G45850.1 | Unigene:At.29990 | ncoils:Coil |
| InterPro:DUF688 | UniProt:F4KEN8 | RefSeq:NP_199397.2 | PFAM:PF05097 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0025022 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF3 | UniParc:UPI0001505853 | SEG:seg | : |
Description
Protein of unknown function (DUF688) [Source:TAIR;Acc:AT5G45850]
Coordinates
chr5:-:18599746..18601661
Molecular Weight (calculated)
50718.9 Da
IEP (calculated)
9.851
GRAVY (calculated)
-0.850
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKKLNLDA PFLSVRRVPT KPDDPNESEN TKKKTMTTRR REIKDSCQET ENEILIRLLQ DQSFEHVMEP SSVPFKWEQT PGKPKDKKNL VEESDLIKAM
101: EMVSSTASFS VNCSSSGVSE FENNGDGDRS SNVSRDDVIL EYRDLIMSRF LPAAEAISLK MKKEASRVKA EKKKKQSIAL QRVSMAINQD LNNDVDDEEH
201: CDHNHVDGID ALVYSNDSKK GQLGFLPWFC SKNSVDVLTP VLSRIKTCQD VGVKSENIIN PKSIDSVYKT KSTSPRIFKS SKVMSKSQEI DATPRFSNDI
301: SRISLPKSRE TLQIPRNHSR LQQTTDQNQR QEIRFLVEEV KRRSNRNKNR SENLSVSQPP LPKTPSESWL CRTLPRSSTT SSVVSGQFAV VVSGQAARFK
401: KNMEKKTDSQ SKKWETIVKT SYSHHDHVRY SEGLIVVHPT RQHKF
101: EMVSSTASFS VNCSSSGVSE FENNGDGDRS SNVSRDDVIL EYRDLIMSRF LPAAEAISLK MKKEASRVKA EKKKKQSIAL QRVSMAINQD LNNDVDDEEH
201: CDHNHVDGID ALVYSNDSKK GQLGFLPWFC SKNSVDVLTP VLSRIKTCQD VGVKSENIIN PKSIDSVYKT KSTSPRIFKS SKVMSKSQEI DATPRFSNDI
301: SRISLPKSRE TLQIPRNHSR LQQTTDQNQR QEIRFLVEEV KRRSNRNKNR SENLSVSQPP LPKTPSESWL CRTLPRSSTT SSVVSGQFAV VVSGQAARFK
401: KNMEKKTDSQ SKKWETIVKT SYSHHDHVRY SEGLIVVHPT RQHKF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.