Factsheet for Zm00001d043395_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d017390_P001
Zm00001d018440_P002
Zm00001d025939_P003
Zm00001d028948_P001
Zm00001d036342_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d049553_P001
Zm00001d051288_P001
Zm00001d051951_P002
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29240.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT1G29240.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT1G29240.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT1G29240.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT1G29240.1	Zm00001d051288_P001	AT3G60600.1	21798944
AT4G18630.1	Zm00001d005003_P002	AT5G21274.1	17360592
AT4G18630.1	Zm00001d008278_P001	AT5G21274.1	17360592
AT4G18630.1	Zm00001d010649_P001	AT5G21274.1	17360592
AT4G18630.1	Zm00001d028948_P001	AT5G21274.1	17360592
AT4G18630.1	Zm00001d038543_P004	AT5G21274.1	17360592
AT4G18630.1	Zm00001d038545_P001	AT5G21274.1	17360592
AT4G18630.1	Zm00001d041430_P001	AT5G21274.1	17360592
AT4G18630.1	Zm00001d043144_P001	AT5G21274.1	17360592
AT4G18630.1	Zm00001d047597_P001	AT5G21274.1	17360592
AT4G18630.1	Zm00001d052415_P001	AT5G21274.1	17360592
AT4G18630.1	Zm00001d018440_P002	AT5G43320.1	21798944
AT4G18630.1	Zm00001d051951_P002	AT5G43320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01501	Sorghum	nucleus	78.09	77.18
TraesCS3D01G295500.1	Wheat	nucleus	60.0	60.27
Os01t0758900-01	Rice	nucleus	57.94	57.77
TraesCS3A01G306400.2	Wheat	nucleus	57.5	55.54
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	58.09	55.4
GSMUA_Achr9P06400_001	Banana	nucleus	29.71	30.38
GSMUA_Achr1P04800_001	Banana	nucleus	22.21	28.98
Solyc07g055140.2.1	Tomato	nucleus	14.85	28.69
GSMUA_Achr6P26820_001	Banana	nucleus	26.91	27.9
KRH22276	Soybean	nucleus	6.62	27.11
KRH74883	Soybean	nucleus	11.47	25.16
KRH04495	Soybean	nucleus	11.32	24.68
CDX94655	Canola	mitochondrion	17.5	24.49
CDY43328	Canola	nucleus	18.24	24.27
CDY15640	Canola	mitochondrion, nucleus, plastid	16.18	24.12
Bra030129.1-P	Field mustard	mitochondrion, nucleus, plastid	17.21	24.07
CDX90178	Canola	nucleus	17.94	23.97
PGSC0003DMT400052652	Potato	nucleus	20.29	23.47
Bra021994.1-P	Field mustard	nucleus	14.12	23.36
AT1G29240.1	Thale cress	nucleus	19.71	23.22
VIT_12s0028g02110.t01	Wine grape	nucleus	23.09	23.16
Bra010842.1-P	Field mustard	nucleus	17.35	22.61
CDY06031	Canola	nucleus	14.41	22.43
CDY53997	Canola	plastid	13.68	22.09
CDY52694	Canola	nucleus	15.15	21.91
CDY63140	Canola	nucleus	15.74	21.88
KRH11026	Soybean	nucleus	21.62	21.71
KRH58978	Soybean	nucleus	21.32	21.67
CDY17227	Canola	nucleus	15.59	21.63
AT4G18630.1	Thale cress	nucleus	15.15	21.5
KRH27055	Soybean	nucleus	17.65	21.39
AT2G30990.4	Thale cress	nucleus	18.53	21.25
Bra012583.1-P	Field mustard	plastid	14.12	21.24
CDY58982	Canola	nucleus	16.62	21.12
Bra021686.1-P	Field mustard	nucleus	16.62	21.12
KRH42875	Soybean	nucleus	20.88	21.04
CDX87761	Canola	nucleus	13.38	21.02
CDY01559	Canola	nucleus, plastid	13.68	20.85
Solyc12g013960.1.1	Tomato	nucleus	18.82	20.85
PGSC0003DMT400039770	Potato	cytosol	17.5	20.77
AT2G34170.3	Thale cress	nucleus	15.88	20.65
CDX99449	Canola	nucleus	14.26	20.55
PGSC0003DMT400026504	Potato	nucleus	20.74	20.32
Solyc02g076680.2.1	Tomato	nucleus	20.59	20.14
KRH21261	Soybean	cytosol, mitochondrion, plastid	11.62	19.95
Bra005448.1-P	Field mustard	nucleus	15.44	19.92
CDX78880	Canola	nucleus	13.82	19.71
CDX97772	Canola	extracellular, vacuole	16.18	19.68
CDY10767	Canola	nucleus	12.21	19.48
Bra013335.1-P	Field mustard	nucleus	13.53	19.37
KRH55736	Soybean	nucleus	19.26	19.07
AT5G45850.1	Thale cress	nucleus	12.35	18.88
KRH25783	Soybean	nucleus	18.97	18.25
VIT_10s0003g01370.t01	Wine grape	plastid	20.88	17.93
Bra018284.1-P	Field mustard	nucleus	12.06	16.87

Protein Annotations

EnsemblPlants:Zm00001d043395_P002	EnsemblPlants:Zm00001d043395_T002	EnsemblPlantsGene:Zm00001d043395	EntrezGene:103651188	InterPro:DUF688	ncoils:Coil
PANTHER:PTHR33671	PANTHER:PTHR33671:SF5	PFAM:PF05097	ProteinID:ONM37755.1	SEG:seg	UniParc:UPI000221B480
UniProt:A0A1D6NB39	MapMan:35.2	:	:	:	:

Description

Unknow protein

Coordinates

chr3:-:198676500..198679792

Molecular Weight (calculated)

73401.2 Da

IEP (calculated)

6.889

GRAVY (calculated)

-0.793

Length

680 amino acids

Sequence
(BLAST)

001: MRADRAMGEG SGNQRIDLGA PLRSARLADA PTQYKAGLNS GPLRHPGTVP FAWEQRPGQP KSVRTRRAAP PTPPRETSRA RPGETGGSPY YDAVAELDLQ
101: ALRGVADQGS RTAAASRKVV VGENELAVAV ESTKDVKKHE ALPAAAVLQK QDGIVEEEEE RFSDALDTLS RTESFAMNCS VSGLSGALDP GHGAEPGSRG
201: FMMDRFLPAA QAVAVGSPQY TFRKAGAAGG TGNSGSGHAR AAAVKAGVGN GEDRMRRAPV QLPYQHLPPN YLSCAYPRHE EHEEEDEGDD DDDDYDVHST
301: RGFSAKGCGL LPSLCAKTSL LLLNPMPAMK RGKVRGRVRG WQLPCKGQGQ GQMAQSPLAR SSQNKHLGCD SNGQSWEDVY KHKLEQKYLG QGEDDRRSKL
401: TSESNQLTFW SDSPTGDGSS PYYHSIAGGM SPYRSYAVMS PSSKPNGSSG TGDKDDKASR SNGSGSFGKD HDRTSLVGSD DSSFKRSSSM SSGPDGTVHE
501: DSMDHHRDTD SDTCHLGVLV HTKAALDANI YDTQPGGRKT VGNNLIVKDQ VNDPLTEKIA ELREPTFPLD DGKDLQRNAS HELPQHLEDN DVAKKEIIPL
601: QSLLPLPVPK SPSESWLSRT LPSVTNRSPL PSFLGIQVHS KKQAPWVITQ PKENDHKPSR PRQIRFADVV EKPTSLDSEI

Best Arabidopsis Sequence Match ( AT2G30990.2 )
(BLAST)

001: MLMGSLMMEE KQLDFNRPLI SIRRPTQTSE SESKTRSFDS VTNMIPPSPP VYKSDIKSGP VRNPGTVPFQ WEHKPGKPKD ERKPVLQSFV EPHFVPKLPP
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES

Arabidopsis Description

Protein of unknown function (DUF688) [Source:TAIR;Acc:AT2G30990]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.