Factsheet for Bra012583.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002368.1-P
Bra006595.1-P
Bra017974.1-P
Bra027483.1-P
Bra035974.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18630.1	Bra017974.1-P	AT3G49580.1	21798944
AT4G18630.1	Bra002368.1-P	AT5G21274.1	17360592
AT4G18630.1	Bra006595.1-P	AT5G21274.1	17360592
AT4G18630.1	Bra027483.1-P	AT5G43320.1	21798944
AT4G18630.1	Bra035974.1-P	AT5G43320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53997	Canola	plastid	92.04	98.81
Bra013335.1-P	Field mustard	nucleus	74.78	71.16
AT4G18630.1	Thale cress	nucleus	71.68	67.64
Bra021994.1-P	Field mustard	nucleus	30.97	34.06
Bra030129.1-P	Field mustard	mitochondrion, nucleus, plastid	24.78	23.05
Bra010842.1-P	Field mustard	nucleus	26.33	22.8
Bra005448.1-P	Field mustard	nucleus	22.35	19.17
Bra021686.1-P	Field mustard	nucleus	22.57	19.07
KRH11026	Soybean	nucleus	26.11	17.43
Bra018284.1-P	Field mustard	nucleus	18.36	17.08
KRH58978	Soybean	nucleus	25.22	17.04
KRH42875	Soybean	nucleus	25.0	16.74
GSMUA_Achr1P04800_001	Banana	nucleus	19.03	16.51
GSMUA_Achr9P06400_001	Banana	nucleus	23.01	15.64
PGSC0003DMT400026504	Potato	nucleus	23.89	15.56
Solyc02g076680.2.1	Tomato	nucleus	23.89	15.54
GSMUA_Achr6P26820_001	Banana	nucleus	22.12	15.24
VIT_10s0003g01370.t01	Wine grape	plastid	25.22	14.39
EES01501	Sorghum	nucleus	21.9	14.39
Zm00001d043395_P002	Maize	nucleus	21.24	14.12
Os01t0758900-01	Rice	nucleus	20.58	13.64
TraesCS3D01G295500.1	Wheat	nucleus	20.35	13.59
TraesCS3A01G306400.2	Wheat	nucleus	21.02	13.49
KRH21261	Soybean	cytosol, mitochondrion, plastid	11.73	13.38
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	20.58	13.04

Protein Annotations

EnsemblPlants:Bra012583.1	EnsemblPlants:Bra012583.1-P	EnsemblPlantsGene:Bra012583	InterPro:DUF688	PANTHER:PTHR33671	PANTHER:PTHR33671:SF3
PFAM:PF05097	SEG:seg	UniParc:UPI0002540A94	UniProt:M4D7X3	MapMan:35.2	:

Description

AT4G18630 (E=5e-164) | unknown protein

Coordinates

chrA03:+:23408359..23409717

Molecular Weight (calculated)

51126.0 Da

IEP (calculated)

7.226

GRAVY (calculated)

-0.762

Length

452 amino acids

Sequence
(BLAST)

001: MEGSKLNLYS PLPSIRRISS KTKHSSESNN KKTIITRPEL RSCLSKEQET SVFVLSDQSF DHLSEPASVP FMWEHTPGKP KDDMATLIQE SGLLETDDEE
101: EEDLYTVSSD GTFSVNCSTS GVSDIEKNGE KSDDASSRES LDQMMSRFLP AAKAMAFTHQ KRSSEQKHFA IVRQRSRVVA EHEHFAIVQS LYDDLNIDDD
201: DDDDDDDEDD EYDVDHRIYP KVTIKKACGF LPRLCAKNSL KISNPVPLVS VSNRGLNHSR EQTGLPNWST RRLSGFMSPY RTSCSAPEKP ESFKRLNIGI
301: SKSQELCPTR TRTREILPNH SHSGEVRMLR NSISTPPRIQ GTTIHDTRFL AEEVIRRRRS SNRSGNLLKT SPKCTAAITT PPLPETPSRP WLRRTLLPPV
401: SPRPYGVVLG QVGAKKLNQE IVESTKWETM VKTSYVHNDH VRYSQVLFEH SP

Best Arabidopsis Sequence Match ( AT4G18630.1 )
(BLAST)

001: MEGKKLNLYA PLPSIRRIPS MIERSSELEN KKTTITRPEL RSCPSTKQET PVFVLPDQSF DHLTEPASIP FMWEQIPGKP KDDMATLIQE SGLLETDDEE
101: EDEVDEDLDT VSSNVSFSVN CSTSGVSEIE KTGERSDCDE KSRESLDLMM SRFLPAAKAM ALQTHQKHQS SYNSSEQKLI TQNREALVAR QRSQLVAEHE
201: HFAIVQSLYD DLNIDDDTED DENDDDGDDY GHVDHKIYPA EVTKKACGFL PRLCAKNSFK FLNPVPLDSV SNRSMKHSGD QTSLPNWSTR RLSGFISPYR
301: TSCSDSGFLG TPEKPESFKR LNRGISKSQE LYPTRTRREV LPNYSNSGEI KMFRNSISTP SRIQRTTIHD SRFLVEEVNR RRNNKSGNLQ QTSSEYTPAL
401: SPPPLPETPS RSWLGRTLLP PVNPRPYGVV LGQVGIKKLN QEVLESTKWE TIVKTSYVHN DHARYSQELI VYPSRQQNT

Arabidopsis Description

Uncharacterized protein At4g18630 [Source:UniProtKB/TrEMBL;Acc:Q8GYP4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.