Factsheet for TraesCS3B01G330200.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G308700.1
TraesCS1A01G308800.1
TraesCS1B01G319300.1
TraesCS1D01G308000.1
TraesCS2A01G368500.1
TraesCS2B01G113800.2
TraesCS2B01G385700.2
TraesCS2D01G365300.2
TraesCS3A01G184500.1
TraesCS3A01G191900.1
TraesCS3A01G335000.1
TraesCS3B01G219900.1
TraesCS3B01G365900.1
TraesCS3D01G188600.1
TraesCS3D01G194500.2
TraesCS3D01G328300.1
TraesCS4B01G131100.1
TraesCS4D01G126100.1
TraesCS5A01G057100.1
TraesCS5A01G057200.1
TraesCS5A01G139700.1
TraesCS5B01G059900.1
TraesCS5B01G137100.1
TraesCS5D01G068000.1
TraesCS5D01G068100.1
TraesCS5D01G153400.1
TraesCS6A01G237600.1
TraesCS6A01G378000.1
TraesCS6B01G266100.1
TraesCS6B01G415700.2
TraesCS6D01G220300.1
TraesCS6D01G362500.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29240.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT1G29240.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT1G29240.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT1G29240.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT1G29240.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT1G29240.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT1G29240.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT1G29240.1	TraesCS7D01G296400.1	AT3G60600.1	21798944
AT4G18630.1	TraesCS1A01G308700.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS1A01G308800.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS1B01G319300.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS1D01G308000.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS2B01G113800.2	AT5G21274.1	17360592
AT4G18630.1	TraesCS3A01G184500.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS3A01G191900.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS3A01G335000.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS3B01G219900.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS3B01G365900.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS3D01G188600.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS3D01G194500.2	AT5G21274.1	17360592
AT4G18630.1	TraesCS3D01G328300.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS4B01G131100.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS4D01G126100.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5A01G057100.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5A01G057200.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5A01G139700.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5B01G059900.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5B01G137100.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5D01G068000.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5D01G068100.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5D01G153400.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS6A01G378000.1	AT5G43320.1	21798944
AT4G18630.1	TraesCS6B01G415700.2	AT5G43320.1	21798944
AT4G18630.1	TraesCS6D01G362500.1	AT5G43320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G295500.1	Wheat	nucleus	86.54	91.14
TraesCS3A01G306400.2	Wheat	nucleus	79.38	80.4
Os01t0758900-01	Rice	nucleus	59.05	61.73
Zm00001d043395_P002	Maize	nucleus	55.4	58.09
EES01501	Sorghum	nucleus	53.86	55.81
GSMUA_Achr1P04800_001	Banana	nucleus	22.86	31.29
GSMUA_Achr9P06400_001	Banana	nucleus	28.33	30.38
Solyc07g055140.2.1	Tomato	nucleus	14.17	28.69
GSMUA_Achr6P26820_001	Banana	nucleus	26.23	28.51
KRH22276	Soybean	nucleus	6.31	27.11
CDY15640	Canola	mitochondrion, nucleus, plastid	15.85	24.78
Bra030129.1-P	Field mustard	mitochondrion, nucleus, plastid	16.83	24.69
CDX94655	Canola	mitochondrion	16.69	24.49
CDY43328	Canola	nucleus	17.53	24.46
Bra021994.1-P	Field mustard	nucleus	14.03	24.33
KRH74883	Soybean	nucleus	10.52	24.19
AT2G30990.4	Thale cress	nucleus	20.06	24.11
CDX90178	Canola	nucleus	17.11	23.97
Bra010842.1-P	Field mustard	nucleus	17.39	23.75
KRH04495	Soybean	nucleus	10.38	23.72
VIT_12s0028g02110.t01	Wine grape	nucleus	22.44	23.6
CDY52694	Canola	nucleus	15.29	23.19
CDY06031	Canola	nucleus	14.17	23.11
AT1G29240.1	Thale cress	nucleus	18.51	22.88
KRH11026	Soybean	nucleus	21.32	22.45
AT2G34170.3	Thale cress	nucleus	16.41	22.37
CDY58982	Canola	nucleus	16.69	22.24
PGSC0003DMT400052652	Potato	nucleus	18.23	22.11
CDY63140	Canola	nucleus	15.15	22.09
CDY01559	Canola	nucleus, plastid	13.74	21.97
Bra021686.1-P	Field mustard	nucleus	16.41	21.87
CDY17227	Canola	nucleus	15.01	21.84
CDX99449	Canola	nucleus	14.45	21.82
CDX87761	Canola	nucleus	13.18	21.71
CDY53997	Canola	plastid	12.76	21.62
CDY10767	Canola	nucleus	12.9	21.6
KRH58978	Soybean	nucleus	20.2	21.52
AT4G18630.1	Thale cress	nucleus	14.45	21.5
CDX78880	Canola	nucleus	14.17	21.17
PGSC0003DMT400039770	Potato	cytosol	16.97	21.12
Bra013335.1-P	Field mustard	nucleus	14.03	21.05
PGSC0003DMT400026504	Potato	nucleus	20.34	20.89
KRH42875	Soybean	nucleus	19.78	20.89
Solyc02g076680.2.1	Tomato	nucleus	20.2	20.72
Bra012583.1-P	Field mustard	plastid	13.04	20.58
CDX97772	Canola	extracellular, vacuole	16.13	20.57
Bra005448.1-P	Field mustard	nucleus	15.01	20.3
KRH21261	Soybean	cytosol, mitochondrion, plastid	11.08	19.95
Solyc12g013960.1.1	Tomato	nucleus	17.11	19.87
KRH27055	Soybean	nucleus	15.57	19.79
KRH55736	Soybean	nucleus	18.79	19.51
KRH25783	Soybean	nucleus	19.07	19.24
AT5G45850.1	Thale cress	nucleus	11.78	18.88
Bra018284.1-P	Field mustard	nucleus	12.76	18.72
VIT_10s0003g01370.t01	Wine grape	plastid	20.34	18.31

Protein Annotations

EnsemblPlants:TraesCS3B01G330200.2	EnsemblPlantsGene:TraesCS3B01G330200	InterPro:DUF688	PANTHER:PTHR33671	PANTHER:PTHR33671:SF5	PFAM:PF05097
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:534190493..534192727

Molecular Weight (calculated)

77573.7 Da

IEP (calculated)

7.202

GRAVY (calculated)

-0.704

Length

713 amino acids

Sequence
(BLAST)

001: MRADRVMAES GKRIDLAAPL RSARLPYHKA DLDSGPVRHP GAVPFVWEQS PGQPKSVRTR RPVPHSPSPS QPRPEENGAT PYHGALGERD RALPNVIPAA
101: AAVPRTGAAE REVERAEVEP TRKEATTPDV LSVADVLRKE EEDVGDDEER FSDALDTLSR TESFTVNCSV SGLSGVPDRP AGAGAAASAE PGARGLMMDR
201: FLPAAQAVAV GSPQYTFRKA SVAGSTGNSA REHAHAAAAN WRMGSDDDRV RRTPVQLPYQ NLPPNYLSCN YPRRDEHEEE EEEEDEDDFD VHSTRGFASK
301: GCGLLPGLCV KTSLLLLNPM PMMKGGKGRR GGRGRGLVSK GRGQKAPSPL ARSSQRKNLG CDSNGVSRCT QQCFMNSELC CFLTISGVVV LNISISVILQ
401: QYWEEVYKHK LEQKYINQGE DRRSKLTSES NHLTFWSDSQ TGDGSSPFRH SIGGGMSPYR RDVALSPSRK ANGSFEVRDK DEKMSRSNGS SSLGIDHDHG
501: SLLGSDHSSL KGSSSMSSGG DRTLHEDSMD HRSGIDSEAS QLTLPLDPKA SLNSGCDVQH GGHQIVRSNS IVEVQDNDTL TKTIAKVPES ISLIPSGNAG
601: SVKLDDRKTH DSSQDVPVHS EDNIAVKKES MPLQFLMPLP VPKSPSDSWL SRNLPSVKNK PPAPSFLGIQ VQSKKQAPWA SAHPKENDLK PPRTRQIRFA
701: DVVERPYYLD TEI

Best Arabidopsis Sequence Match ( AT2G30990.2 )
(BLAST)

001: MLMGSLMMEE KQLDFNRPLI SIRRPTQTSE SESKTRSFDS VTNMIPPSPP VYKSDIKSGP VRNPGTVPFQ WEHKPGKPKD ERKPVLQSFV EPHFVPKLPP
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES

Arabidopsis Description

Protein of unknown function (DUF688) [Source:TAIR;Acc:AT2G30990]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.