Factsheet for Bra013335.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002368.1-P
Bra006595.1-P
Bra017974.1-P
Bra027483.1-P
Bra035974.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18630.1	Bra017974.1-P	AT3G49580.1	21798944
AT4G18630.1	Bra002368.1-P	AT5G21274.1	17360592
AT4G18630.1	Bra006595.1-P	AT5G21274.1	17360592
AT4G18630.1	Bra027483.1-P	AT5G43320.1	21798944
AT4G18630.1	Bra035974.1-P	AT5G43320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78880	Canola	nucleus	98.53	98.11
AT4G18630.1	Thale cress	nucleus	77.47	76.83
Bra012583.1-P	Field mustard	plastid	71.16	74.78
Bra021994.1-P	Field mustard	nucleus	29.89	34.55
Bra030129.1-P	Field mustard	mitochondrion, nucleus, plastid	25.89	25.31
Bra010842.1-P	Field mustard	nucleus	26.74	24.33
Bra005448.1-P	Field mustard	nucleus	22.11	19.92
Bra021686.1-P	Field mustard	nucleus	22.11	19.63
KRH42875	Soybean	nucleus	26.95	18.96
KRH58978	Soybean	nucleus	26.32	18.68
KRH11026	Soybean	nucleus	26.53	18.61
Bra018284.1-P	Field mustard	nucleus	18.32	17.9
GSMUA_Achr1P04800_001	Banana	nucleus	19.16	17.47
GSMUA_Achr9P06400_001	Banana	nucleus	23.37	16.69
PGSC0003DMT400026504	Potato	nucleus	24.21	16.57
GSMUA_Achr6P26820_001	Banana	nucleus	22.74	16.46
Solyc02g076680.2.1	Tomato	nucleus	24.0	16.4
KRH21261	Soybean	cytosol, mitochondrion, plastid	13.05	15.66
VIT_10s0003g01370.t01	Wine grape	plastid	25.68	15.4
Os01t0758900-01	Rice	nucleus	21.47	14.96
TraesCS3D01G295500.1	Wheat	nucleus	20.63	14.48
TraesCS3A01G306400.2	Wheat	nucleus	21.26	14.35
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	21.05	14.03
EES01501	Sorghum	nucleus	20.21	13.95
Zm00001d043395_P002	Maize	nucleus	19.37	13.53

Protein Annotations

EnsemblPlants:Bra013335.1	EnsemblPlants:Bra013335.1-P	EnsemblPlantsGene:Bra013335	InterPro:DUF688	PANTHER:PTHR33671	PANTHER:PTHR33671:SF3
PFAM:PF05097	SEG:seg	UniParc:UPI0002546266	UniProt:M4DA25	MapMan:35.2	:

Description

AT4G18630 (E=1e-190) | unknown protein

Coordinates

chrA01:+:5054818..5056363

Molecular Weight (calculated)

53766.7 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.868

Length

475 amino acids

Sequence
(BLAST)

001: MEGKKLNLYA PLPSIRRMSS KKEYSSESEN KKTAITRPEL PSRLSKEQET PVFVLPDQSF DHLTEPASVP FVWEQIPGKP KDDMATLIQE SGLLETDDED
101: EEEEDEDTVS STGSFSVNCS TSGVSDIEKN GERSEDVSSR ESLDLMMSRF LPAAKAMAFT HQKHQSPSSY NSSEQKQTVQ NREALVTRQR RQLVAEHEHF
201: AIVQSLYDDL NIEDDDESDD DDDDDHRILP EVTIKKACGF LPRLCARNSF KFSNPVPLDT KLNRSLKHSG EQTGIPNWST RRLSGFTSPY RTSCSETGFL
301: GAPVKPESFK RLTRGISKSQ ELYPPRTRRE TLPNYSHSGE IRMFRNSTST PSRIQRTTTM HDSRFLVEEV NRRKSSSINR SGSLLKTSPE YTAAAISPPP
401: LPETPSRSWL RRTLLPPVSP KPYGVGVGQV GTKKLDQEIL ESTKWETIVK TSYVHNDHVR YSQELVVHPS RQQNT

Best Arabidopsis Sequence Match ( AT4G18630.1 )
(BLAST)

001: MEGKKLNLYA PLPSIRRIPS MIERSSELEN KKTTITRPEL RSCPSTKQET PVFVLPDQSF DHLTEPASIP FMWEQIPGKP KDDMATLIQE SGLLETDDEE
101: EDEVDEDLDT VSSNVSFSVN CSTSGVSEIE KTGERSDCDE KSRESLDLMM SRFLPAAKAM ALQTHQKHQS SYNSSEQKLI TQNREALVAR QRSQLVAEHE
201: HFAIVQSLYD DLNIDDDTED DENDDDGDDY GHVDHKIYPA EVTKKACGFL PRLCAKNSFK FLNPVPLDSV SNRSMKHSGD QTSLPNWSTR RLSGFISPYR
301: TSCSDSGFLG TPEKPESFKR LNRGISKSQE LYPTRTRREV LPNYSNSGEI KMFRNSISTP SRIQRTTIHD SRFLVEEVNR RRNNKSGNLQ QTSSEYTPAL
401: SPPPLPETPS RSWLGRTLLP PVNPRPYGVV LGQVGIKKLN QEVLESTKWE TIVKTSYVHN DHARYSQELI VYPSRQQNT

Arabidopsis Description

Uncharacterized protein At4g18630 [Source:UniProtKB/TrEMBL;Acc:Q8GYP4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.