Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013335.1-P | Field mustard | nucleus | 76.83 | 77.47 |
| CDX78880 | Canola | nucleus | 76.62 | 76.94 |
| CDX99449 | Canola | nucleus | 73.28 | 74.36 |
| CDY01559 | Canola | nucleus, plastid | 68.89 | 73.99 |
| Bra012583.1-P | Field mustard | plastid | 67.64 | 71.68 |
| CDY53997 | Canola | plastid | 62.21 | 70.78 |
| AT5G45850.1 | Thale cress | nucleus | 32.15 | 34.61 |
| AT1G29240.1 | Thale cress | nucleus | 28.39 | 23.57 |
| AT2G34170.3 | Thale cress | nucleus | 22.96 | 21.03 |
| KRH42875 | Soybean | nucleus | 25.26 | 17.93 |
| KRH58978 | Soybean | nucleus | 24.84 | 17.79 |
| AT2G30990.4 | Thale cress | nucleus | 21.92 | 17.71 |
| PGSC0003DMT400026504 | Potato | nucleus | 25.26 | 17.44 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 18.79 | 17.27 |
| Solyc02g076680.2.1 | Tomato | nucleus | 25.05 | 17.27 |
| KRH11026 | Soybean | nucleus | 24.22 | 17.13 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 22.76 | 16.62 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 22.96 | 16.54 |
| Os01t0758900-01 | Rice | nucleus | 22.13 | 15.54 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 25.47 | 15.4 |
| Zm00001d043395_P002 | Maize | nucleus | 21.5 | 15.15 |
| EES01501 | Sorghum | nucleus | 21.5 | 14.97 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 21.09 | 14.92 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 21.71 | 14.77 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 12.11 | 14.65 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 21.5 | 14.45 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827597 | ProteinID:AEE84070.1 | EMBL:AK117470 | ArrayExpress:AT4G18630 | EnsemblPlantsGene:AT4G18630 |
| RefSeq:AT4G18630 | TAIR:AT4G18630 | RefSeq:AT4G18630-TAIR-G | EnsemblPlants:AT4G18630.1 | TAIR:AT4G18630.1 | EMBL:BT005405 |
| InterPro:DUF688 | RefSeq:NP_193598.2 | PFAM:PF05097 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0020100 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF3 | UniProt:Q8GYP4 |
| UniParc:UPI000000C637 | SEG:seg | : | : | : | : |
Description
Uncharacterized protein At4g18630 [Source:UniProtKB/TrEMBL;Acc:Q8GYP4]
Coordinates
chr4:+:10256777..10258957
Molecular Weight (calculated)
54376.5 Da
IEP (calculated)
5.693
GRAVY (calculated)
-0.822
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKKLNLYA PLPSIRRIPS MIERSSELEN KKTTITRPEL RSCPSTKQET PVFVLPDQSF DHLTEPASIP FMWEQIPGKP KDDMATLIQE SGLLETDDEE
101: EDEVDEDLDT VSSNVSFSVN CSTSGVSEIE KTGERSDCDE KSRESLDLMM SRFLPAAKAM ALQTHQKHQS SYNSSEQKLI TQNREALVAR QRSQLVAEHE
201: HFAIVQSLYD DLNIDDDTED DENDDDGDDY GHVDHKIYPA EVTKKACGFL PRLCAKNSFK FLNPVPLDSV SNRSMKHSGD QTSLPNWSTR RLSGFISPYR
301: TSCSDSGFLG TPEKPESFKR LNRGISKSQE LYPTRTRREV LPNYSNSGEI KMFRNSISTP SRIQRTTIHD SRFLVEEVNR RRNNKSGNLQ QTSSEYTPAL
401: SPPPLPETPS RSWLGRTLLP PVNPRPYGVV LGQVGIKKLN QEVLESTKWE TIVKTSYVHN DHARYSQELI VYPSRQQNT
101: EDEVDEDLDT VSSNVSFSVN CSTSGVSEIE KTGERSDCDE KSRESLDLMM SRFLPAAKAM ALQTHQKHQS SYNSSEQKLI TQNREALVAR QRSQLVAEHE
201: HFAIVQSLYD DLNIDDDTED DENDDDGDDY GHVDHKIYPA EVTKKACGFL PRLCAKNSFK FLNPVPLDSV SNRSMKHSGD QTSLPNWSTR RLSGFISPYR
301: TSCSDSGFLG TPEKPESFKR LNRGISKSQE LYPTRTRREV LPNYSNSGEI KMFRNSISTP SRIQRTTIHD SRFLVEEVNR RRNNKSGNLQ QTSSEYTPAL
401: SPPPLPETPS RSWLGRTLLP PVNPRPYGVV LGQVGIKKLN QEVLESTKWE TIVKTSYVHN DHARYSQELI VYPSRQQNT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.