Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90178 | Canola | nucleus | 58.93 | 66.8 |
| CDY43328 | Canola | nucleus | 57.89 | 65.36 |
| Bra010842.1-P | Field mustard | nucleus | 58.75 | 64.94 |
| Bra030129.1-P | Field mustard | mitochondrion, nucleus, plastid | 50.43 | 59.88 |
| CDX94655 | Canola | mitochondrion | 50.09 | 59.47 |
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 46.45 | 58.77 |
| AT2G34170.3 | Thale cress | nucleus | 45.93 | 50.67 |
| AT4G18630.1 | Thale cress | nucleus | 23.57 | 28.39 |
| KRH58978 | Soybean | nucleus | 30.5 | 26.31 |
| KRH11026 | Soybean | nucleus | 30.33 | 25.85 |
| KRH42875 | Soybean | nucleus | 30.16 | 25.78 |
| AT5G45850.1 | Thale cress | nucleus | 18.72 | 24.27 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 31.89 | 23.23 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 15.94 | 23.23 |
| PGSC0003DMT400026504 | Potato | nucleus | 27.73 | 23.05 |
| Solyc02g076680.2.1 | Tomato | nucleus | 27.73 | 23.02 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 20.45 | 22.65 |
| AT2G30990.4 | Thale cress | nucleus | 21.84 | 21.25 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 23.92 | 21.04 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 23.74 | 20.6 |
| Zm00001d043395_P002 | Maize | nucleus | 23.22 | 19.71 |
| Os01t0758900-01 | Rice | nucleus | 23.22 | 19.65 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 22.88 | 19.5 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 22.88 | 18.75 |
| EES01501 | Sorghum | nucleus | 22.36 | 18.75 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 22.88 | 18.51 |
Protein Annotations
| MapMan:35.2 | EntrezGene:839798 | UniProt:A0A178WN36 | ProteinID:AAF88115.1 | ProteinID:AEE31064.1 | ArrayExpress:AT1G29240 |
| EnsemblPlantsGene:AT1G29240 | RefSeq:AT1G29240 | TAIR:AT1G29240 | RefSeq:AT1G29240-TAIR-G | EnsemblPlants:AT1G29240.1 | TAIR:AT1G29240.1 |
| EMBL:AY150485 | Unigene:At.40779 | InterPro:DUF688 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003743 | GO:GO:0005488 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | RefSeq:NP_174218.2 | ProteinID:OAP18512.1 |
| PFAM:PF05097 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF3 | UniProt:Q9LP52 | UniParc:UPI00000AC0A3 | SEG:seg |
Description
F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
Coordinates
chr1:-:10216779..10219942
Molecular Weight (calculated)
65126.1 Da
IEP (calculated)
7.173
GRAVY (calculated)
-0.844
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.