Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g055140.2.1 | Tomato | nucleus | 23.22 | 34.38 |
| KRH22276 | Soybean | nucleus | 10.75 | 33.73 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 42.03 | 32.93 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 39.16 | 31.1 |
| KRH74883 | Soybean | nucleus | 18.04 | 30.32 |
| KRH04495 | Soybean | nucleus | 16.51 | 27.56 |
| PGSC0003DMT400052652 | Potato | nucleus | 30.9 | 27.38 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 31.86 | 24.52 |
| Os01t0758900-01 | Rice | nucleus | 31.86 | 24.34 |
| CDY58982 | Canola | nucleus | 24.18 | 23.55 |
| KRH27055 | Soybean | nucleus | 25.34 | 23.53 |
| Bra021686.1-P | Field mustard | nucleus | 23.99 | 23.36 |
| Solyc12g013960.1.1 | Tomato | nucleus | 27.45 | 23.29 |
| CDY52694 | Canola | nucleus | 20.92 | 23.19 |
| VIT_12s0028g02110.t01 | Wine grape | nucleus | 29.94 | 23.01 |
| PGSC0003DMT400039770 | Potato | cytosol | 25.14 | 22.86 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 31.29 | 22.86 |
| CDY43328 | Canola | nucleus | 22.07 | 22.5 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 30.33 | 22.44 |
| CDX90178 | Canola | nucleus | 21.88 | 22.4 |
| CDX97772 | Canola | extracellular, vacuole | 23.99 | 22.36 |
| EES01501 | Sorghum | nucleus | 29.37 | 22.24 |
| Zm00001d043395_P002 | Maize | nucleus | 28.98 | 22.21 |
| KRH11026 | Soybean | nucleus | 28.79 | 22.16 |
| AT2G30990.4 | Thale cress | nucleus | 25.14 | 22.09 |
| Bra010842.1-P | Field mustard | nucleus | 21.88 | 21.84 |
| KRH25783 | Soybean | nucleus | 29.17 | 21.5 |
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 18.81 | 21.49 |
| Bra030129.1-P | Field mustard | mitochondrion, nucleus, plastid | 19.96 | 21.4 |
| KRH58978 | Soybean | nucleus | 27.45 | 21.38 |
| CDY10767 | Canola | nucleus | 17.47 | 21.36 |
| KRH42875 | Soybean | nucleus | 27.64 | 21.33 |
| Solyc02g076680.2.1 | Tomato | nucleus | 28.02 | 21.01 |
| CDX94655 | Canola | mitochondrion | 19.58 | 20.99 |
| Bra021994.1-P | Field mustard | nucleus | 16.51 | 20.92 |
| PGSC0003DMT400026504 | Potato | nucleus | 27.83 | 20.89 |
| CDY63140 | Canola | nucleus | 19.58 | 20.86 |
| KRH55736 | Soybean | nucleus | 27.26 | 20.67 |
| AT2G34170.3 | Thale cress | nucleus | 20.54 | 20.46 |
| AT1G29240.1 | Thale cress | nucleus | 22.65 | 20.45 |
| CDY17227 | Canola | nucleus | 19.19 | 20.41 |
| AT5G45850.1 | Thale cress | nucleus | 17.08 | 20.0 |
| CDY06031 | Canola | nucleus | 16.51 | 19.68 |
| CDY53997 | Canola | plastid | 15.74 | 19.48 |
| Bra005448.1-P | Field mustard | nucleus | 19.58 | 19.35 |
| CDY01559 | Canola | nucleus, plastid | 16.51 | 19.28 |
| CDX99449 | Canola | nucleus | 17.47 | 19.28 |
| Bra013335.1-P | Field mustard | nucleus | 17.47 | 19.16 |
| Bra012583.1-P | Field mustard | plastid | 16.51 | 19.03 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 28.79 | 18.94 |
| Bra018284.1-P | Field mustard | nucleus | 17.66 | 18.93 |
| CDX78880 | Canola | nucleus | 17.27 | 18.87 |
| AT4G18630.1 | Thale cress | nucleus | 17.27 | 18.79 |
| CDX87761 | Canola | nucleus | 15.16 | 18.24 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 11.9 | 15.66 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P04800_001 | EnsemblPlants:GSMUA_Achr1T04800_001 | EnsemblPlantsGene:GSMUA_Achr1G04800_001 | InterPro:DUF688 | PANTHER:PTHR33671 | PFAM:PF05097 |
| SEG:seg | UniParc:UPI000296E9F9 | UniProt:M0RX38 | MapMan:35.2 | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G04800_001]
Coordinates
chr1:+:3993454..3995019
Molecular Weight (calculated)
56679.9 Da
IEP (calculated)
8.311
GRAVY (calculated)
-0.831
Length
521 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDKKLDFDA PLLSVRRLSA EAAAAAAAAA SSSSSVPPAY GSGESGRKPP PRRFSLPFYR SELKSGPVCN PGVVPFVWEQ TPGQPKSGGG RQPTVKELHS
101: SREATAPPAK LGSSIGIHKS AAFNPSEGAA ASPEAAKEED LKADNRSQQQ PTQAPNNTNN NDDDDDDGDV FTDAPDALSR TESFLMNCSV SGLSSFREHV
201: KPSTHASREP QVQDFMMARF LPAAQALASG SPQYTFRKAA TPAREPTRAT DRLVSENLRR SPLLHHRRPS HSTDDDGEED DDDYDNHGRT PSGACGLLPK
301: FSLKSSFCLF NPFPGMKHRG RHLPPPRRRE IHRPQIKNSS QEEDEGTKLT SKPNRRGDSP TAQHSIGGAV SPYRYEAPPS PFREGRGFLG VPGKESNTTN
401: IEDGSRLDLK KTHADVAHHP EAEDSDMNSV SPLQSPLPLL PPQSPSESWL LHTMPSVSSK KNPTPWSFLG LGLQPRKQAL THLEQKTNAE PSKPQRRHAR
501: FAEVFILLLC NICGKSVATC K
101: SREATAPPAK LGSSIGIHKS AAFNPSEGAA ASPEAAKEED LKADNRSQQQ PTQAPNNTNN NDDDDDDGDV FTDAPDALSR TESFLMNCSV SGLSSFREHV
201: KPSTHASREP QVQDFMMARF LPAAQALASG SPQYTFRKAA TPAREPTRAT DRLVSENLRR SPLLHHRRPS HSTDDDGEED DDDYDNHGRT PSGACGLLPK
301: FSLKSSFCLF NPFPGMKHRG RHLPPPRRRE IHRPQIKNSS QEEDEGTKLT SKPNRRGDSP TAQHSIGGAV SPYRYEAPPS PFREGRGFLG VPGKESNTTN
401: IEDGSRLDLK KTHADVAHHP EAEDSDMNSV SPLQSPLPLL PPQSPSESWL LHTMPSVSSK KNPTPWSFLG LGLQPRKQAL THLEQKTNAE PSKPQRRHAR
501: FAEVFILLLC NICGKSVATC K
001: MLMGSLMMEE KQLDFNRPLI SIRRPTQTSE SESKTRSFDS VTNMIPPSPP VYKSDIKSGP VRNPGTVPFQ WEHKPGKPKD ERKPVLQSFV EPHFVPKLPP
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES
Arabidopsis Description
Protein of unknown function (DUF688) [Source:TAIR;Acc:AT2G30990]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.