Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- extracellular 4
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58982 | Canola | nucleus | 77.1 | 80.56 |
| CDY52694 | Canola | nucleus | 46.15 | 54.89 |
| AT2G30990.4 | Thale cress | nucleus | 57.07 | 53.79 |
| CDY10767 | Canola | nucleus | 40.61 | 53.29 |
| KRH22276 | Soybean | nucleus | 10.38 | 34.94 |
| KRH74883 | Soybean | nucleus | 16.82 | 30.32 |
| Solyc07g055140.2.1 | Tomato | nucleus | 18.43 | 29.26 |
| KRH04495 | Soybean | nucleus | 15.21 | 27.24 |
| PGSC0003DMT400052652 | Potato | nucleus | 28.62 | 27.21 |
| PGSC0003DMT400039770 | Potato | cytosol | 27.73 | 27.05 |
| Solyc12g013960.1.1 | Tomato | nucleus | 29.34 | 26.71 |
| VIT_12s0028g02110.t01 | Wine grape | nucleus | 31.13 | 25.66 |
| KRH27055 | Soybean | nucleus | 25.4 | 25.31 |
| KRH55736 | Soybean | nucleus | 29.52 | 24.02 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 22.36 | 23.99 |
| KRH25783 | Soybean | nucleus | 29.87 | 23.62 |
| CDY43328 | Canola | nucleus | 21.47 | 23.48 |
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 18.96 | 23.25 |
| CDX94655 | Canola | mitochondrion | 20.04 | 23.05 |
| CDX90178 | Canola | nucleus | 20.75 | 22.79 |
| CDY06031 | Canola | nucleus | 17.53 | 22.43 |
| CDX87761 | Canola | nucleus | 17.17 | 22.17 |
| CDY63140 | Canola | nucleus | 19.14 | 21.88 |
| CDX78880 | Canola | nucleus | 18.43 | 21.59 |
| CDY17227 | Canola | nucleus | 18.78 | 21.43 |
| CDX99449 | Canola | nucleus | 18.07 | 21.4 |
| CDY01559 | Canola | nucleus, plastid | 16.99 | 21.3 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 23.79 | 20.0 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 23.43 | 19.97 |
| CDY53997 | Canola | plastid | 15.03 | 19.95 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 20.57 | 16.99 |
| Os01t0758900-01 | Rice | nucleus | 20.21 | 16.57 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 20.57 | 16.34 |
| Zm00001d043395_P002 | Maize | nucleus | 19.68 | 16.18 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 20.57 | 16.13 |
| EES01501 | Sorghum | nucleus | 19.14 | 15.55 |
Protein Annotations
| EnsemblPlants:CDX97772 | EnsemblPlantsGene:GSBRNA2T00105052001 | InterPro:DUF688 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF2 | PFAM:PF05097 |
| ProteinID:CDX97772 | ProteinID:CDX97772.1 | SEG:seg | UniParc:UPI0004EE07E2 | MapMan:35.2 | : |
Description
BnaC04g41670D
Coordinates
chrLK031901:+:256169..258322
Molecular Weight (calculated)
62671.1 Da
IEP (calculated)
6.458
GRAVY (calculated)
-0.636
Length
559 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSFIFLYT TSPPSLLFGL LSQINPLYLS LQSRVCSLKL TDFMLMESLV MEEKKQLDFN RPLISIRRPI QTSEPNRKTR SSDSLANKIL PSPPVYKSDI
101: NSGPVRNPGT VPFQWEHKPG KPKDERKPEL QSVVVEQHFV PKLPPGRIVK KPETRADHVE DAKSCSSWYD DESDDTYLDA ADTLSRSESF FLNCSNVSGQ
201: GMLVEPFGTL SSDRQTQDLM MGRFLPAAKA LTSETPPHLA KKPPKPEEPA RQIVVVKEKQ NKAEQNPYRF HHSSDQQEEE DEDTSSMMAS GVCGLLPQIC
301: LRSSFGVLNP VPSLRRQAQR GVSVRRMRSK YQDPITTTTT PCNENHKVKI NGSSTPEGKE RLENLSSASR TKTSKNFGEL LASDDNTWEP YSEAPVAEKT
401: LYVDTVHSVH KKVQEESLLK DYPSLEVVPV KEDVQNLIGA SEEAISGLKV EECADQAISE VVEITKDFEC SRLHHHHIVA PPSLPKAPSD SWLKRTLPTI
501: PSKNNSFTWL QSLGIDDNNN QITKSIQENL KWETMVKTSN TQQGFVCISK DTLNPIPEA
101: NSGPVRNPGT VPFQWEHKPG KPKDERKPEL QSVVVEQHFV PKLPPGRIVK KPETRADHVE DAKSCSSWYD DESDDTYLDA ADTLSRSESF FLNCSNVSGQ
201: GMLVEPFGTL SSDRQTQDLM MGRFLPAAKA LTSETPPHLA KKPPKPEEPA RQIVVVKEKQ NKAEQNPYRF HHSSDQQEEE DEDTSSMMAS GVCGLLPQIC
301: LRSSFGVLNP VPSLRRQAQR GVSVRRMRSK YQDPITTTTT PCNENHKVKI NGSSTPEGKE RLENLSSASR TKTSKNFGEL LASDDNTWEP YSEAPVAEKT
401: LYVDTVHSVH KKVQEESLLK DYPSLEVVPV KEDVQNLIGA SEEAISGLKV EECADQAISE VVEITKDFEC SRLHHHHIVA PPSLPKAPSD SWLKRTLPTI
501: PSKNNSFTWL QSLGIDDNNN QITKSIQENL KWETMVKTSN TQQGFVCISK DTLNPIPEA
001: MLMGSLMMEE KQLDFNRPLI SIRRPTQTSE SESKTRSFDS VTNMIPPSPP VYKSDIKSGP VRNPGTVPFQ WEHKPGKPKD ERKPVLQSFV EPHFVPKLPP
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES
Arabidopsis Description
Protein of unknown function (DUF688) [Source:TAIR;Acc:AT2G30990]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.