Factsheet for VIT_12s0028g02110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22276	Soybean	nucleus	11.36	46.39
Solyc07g055140.2.1	Tomato	nucleus	23.75	45.74
KRH74883	Soybean	nucleus	20.65	45.16
KRH04495	Soybean	nucleus	19.47	42.31
PGSC0003DMT400052652	Potato	nucleus	34.66	39.97
KRH27055	Soybean	nucleus	31.27	37.79
KRH25783	Soybean	nucleus	38.79	37.2
KRH55736	Soybean	nucleus	37.46	36.97
CDY52694	Canola	nucleus	24.63	35.53
PGSC0003DMT400039770	Potato	cytosol	29.2	34.55
Solyc12g013960.1.1	Tomato	nucleus	31.27	34.53
Bra021686.1-P	Field mustard	nucleus	26.25	33.27
AT2G30990.4	Thale cress	nucleus	29.06	33.22
CDY58982	Canola	nucleus	26.11	33.08
CDY10767	Canola	nucleus	19.91	31.69
CDX97772	Canola	extracellular, vacuole	25.66	31.13
VIT_10s0003g01370.t01	Wine grape	plastid	35.84	30.68
GSMUA_Achr9P06400_001	Banana	nucleus	29.65	30.23
GSMUA_Achr1P04800_001	Banana	nucleus	23.01	29.94
GSMUA_Achr6P26820_001	Banana	nucleus	28.02	28.96
Bra018284.1-P	Field mustard	nucleus	19.76	27.57
Os01t0758900-01	Rice	nucleus	24.63	24.49
TraesCS3D01G295500.1	Wheat	nucleus	23.75	23.78
EES01501	Sorghum	nucleus	23.89	23.55
TraesCS3A01G306400.2	Wheat	nucleus	24.34	23.44
Zm00001d043395_P002	Maize	nucleus	23.16	23.09
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	23.6	22.44

Protein Annotations

EntrezGene:100245463	wikigene:100245463	MapMan:35.2	EMBL:AM478340	ProteinID:CAN81695	ProteinID:CAN81695.1
ProteinID:CCB47369	ProteinID:CCB47369.1	InterPro:DUF688	UniProt:F6H501	EMBL:FN595235	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EntrezGene:LOC100245463
wikigene:LOC100245463	PFAM:PF05097	PANTHER:PTHR33671	PANTHER:PTHR33671:SF2	UniParc:UPI000210923B	ArrayExpress:VIT_12s0028g02110
EnsemblPlantsGene:VIT_12s0028g02110	EnsemblPlants:VIT_12s0028g02110.t01	RefSeq:XP_002276750	RefSeq:XP_002276750.2	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:2805670..2809689

Molecular Weight (calculated)

75030.5 Da

IEP (calculated)

7.451

GRAVY (calculated)

-0.824

Length

678 amino acids

Sequence
(BLAST)

001: MEDKQLNFNQ PLLSVRRFSS TVASTEVESK RKNDSSLSNI LPLPTYKSEL KSGPVRNPGA VPFIWEQTPG RPKDESKPQI PPTTPKLPPG RILNTKQRPP
101: DKVSKDPIVA GTQTANILSN SRNVSSLDEN VTKLENFKEG VEDKGSSGSE DGDVAYLDAL DTLSRSESFF LNCSVSGLSG LDGPDVKPSG TFSTDPQTRD
201: FMMGRFLPAA KAMASETPPY ASRRQPVAQR QPVAQAQPRQ VKNVVSGDRR PPLYQYRLNV SSHYAQDKGR EESEDEDNYV ETELLSAKVC GLFPRFGLKN
301: SFCLMNPVLR MGVQARVPAS SLRATRARFS YSDASTLTEN KHSRNVVNEK KSGGLQRSKL QELKRKEENE SSKTNYKSDS QKPDGSSLYM RLQGGGMLPY
401: RSDSLLSHFN EEKGFHGIHE APMSLGVDGF GSHQQGQKIF RELLASSPQR ESGLESPTVE KTLYIDSVHI VEPRNSNSSR SDMKGLSDTR SDFEILGKSS
501: TPSMESSLQD IKHLSIADEE GKSQPKILDS MGSNLLFSCV KSDQEVQMDQ RKGFSSSDPI LDSMTLDSPE VLDNRNLDDE NHRPSEADSL EKFHDSHSEL
601: PLPPPLPKSP SESWLSRTLP SASSRNSQSH FATWTSPRNQ ASKTSSPDPK WETIVKTSNA HKGHLRFSEK LLAPVPES

Best Arabidopsis Sequence Match ( AT2G30990.2 )
(BLAST)

001: MLMGSLMMEE KQLDFNRPLI SIRRPTQTSE SESKTRSFDS VTNMIPPSPP VYKSDIKSGP VRNPGTVPFQ WEHKPGKPKD ERKPVLQSFV EPHFVPKLPP
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES

Arabidopsis Description

Protein of unknown function (DUF688) [Source:TAIR;Acc:AT2G30990]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.