Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P26820_001 | Banana | nucleus | 54.89 | 55.64 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 32.93 | 42.03 |
| Solyc07g055140.2.1 | Tomato | nucleus | 20.3 | 38.35 |
| KRH74883 | Soybean | nucleus | 16.24 | 34.84 |
| KRH22276 | Soybean | nucleus | 8.27 | 33.13 |
| KRH04495 | Soybean | nucleus | 14.59 | 31.09 |
| PGSC0003DMT400052652 | Potato | nucleus | 27.07 | 30.61 |
| Os01t0758900-01 | Rice | nucleus | 31.13 | 30.35 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 30.53 | 29.99 |
| Zm00001d043395_P002 | Maize | nucleus | 30.38 | 29.71 |
| VIT_12s0028g02110.t01 | Wine grape | nucleus | 30.23 | 29.65 |
| EES01501 | Sorghum | nucleus | 30.23 | 29.22 |
| KRH27055 | Soybean | nucleus | 24.06 | 28.52 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 30.38 | 28.33 |
| CDY52694 | Canola | nucleus | 20.0 | 28.3 |
| PGSC0003DMT400039770 | Potato | cytosol | 23.91 | 27.75 |
| CDY10767 | Canola | nucleus | 17.74 | 27.7 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 29.32 | 27.7 |
| Solyc12g013960.1.1 | Tomato | nucleus | 24.36 | 26.38 |
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 18.05 | 26.32 |
| AT2G34170.3 | Thale cress | nucleus | 20.45 | 26.0 |
| Bra021994.1-P | Field mustard | nucleus | 15.94 | 25.79 |
| Bra030129.1-P | Field mustard | mitochondrion, nucleus, plastid | 18.8 | 25.72 |
| CDY43328 | Canola | nucleus | 19.7 | 25.64 |
| CDY58982 | Canola | nucleus | 20.6 | 25.61 |
| CDY63140 | Canola | nucleus | 18.8 | 25.56 |
| CDY17227 | Canola | nucleus | 18.8 | 25.51 |
| Bra021686.1-P | Field mustard | nucleus | 20.45 | 25.42 |
| KRH25783 | Soybean | nucleus | 26.92 | 25.32 |
| KRH55736 | Soybean | nucleus | 26.02 | 25.18 |
| KRH58978 | Soybean | nucleus | 25.26 | 25.11 |
| CDX94655 | Canola | mitochondrion | 18.35 | 25.1 |
| CDX90178 | Canola | nucleus | 19.1 | 24.95 |
| KRH42875 | Soybean | nucleus | 25.11 | 24.74 |
| AT2G30990.4 | Thale cress | nucleus | 21.95 | 24.62 |
| CDY06031 | Canola | nucleus | 16.09 | 24.49 |
| KRH11026 | Soybean | nucleus | 24.81 | 24.37 |
| Bra010842.1-P | Field mustard | nucleus | 19.1 | 24.33 |
| Bra018284.1-P | Field mustard | nucleus | 17.59 | 24.07 |
| CDX97772 | Canola | extracellular, vacuole | 20.0 | 23.79 |
| AT1G29240.1 | Thale cress | nucleus | 20.6 | 23.74 |
| CDX99449 | Canola | nucleus | 16.84 | 23.73 |
| CDY01559 | Canola | nucleus, plastid | 15.79 | 23.54 |
| Bra013335.1-P | Field mustard | nucleus | 16.69 | 23.37 |
| PGSC0003DMT400026504 | Potato | nucleus | 24.36 | 23.34 |
| CDY53997 | Canola | plastid | 14.74 | 23.28 |
| Solyc02g076680.2.1 | Tomato | nucleus | 24.21 | 23.17 |
| Bra005448.1-P | Field mustard | nucleus | 18.35 | 23.15 |
| AT5G45850.1 | Thale cress | nucleus | 15.49 | 23.15 |
| Bra012583.1-P | Field mustard | plastid | 15.64 | 23.01 |
| AT4G18630.1 | Thale cress | nucleus | 16.54 | 22.96 |
| CDX78880 | Canola | nucleus | 16.39 | 22.85 |
| CDX87761 | Canola | nucleus | 14.74 | 22.63 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 26.92 | 22.6 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 12.48 | 20.96 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P06400_001 | EnsemblPlants:GSMUA_Achr9T06400_001 | EnsemblPlantsGene:GSMUA_Achr9G06400_001 | InterPro:DUF688 | ncoils:Coil | PANTHER:PTHR33671 |
| PFAM:PF05097 | SEG:seg | UniParc:UPI00029513EE | UniProt:M0TXZ9 | MapMan:35.2 | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G06400_001]
Coordinates
chr9:-:4083619..4086202
Molecular Weight (calculated)
73481.1 Da
IEP (calculated)
6.612
GRAVY (calculated)
-0.809
Length
665 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKNLMEDKK IDLDAPLLSV RRFSAGAVAA SSPTPPVSNG EEGDQRPPPP RRSSLPFYKS DLKSGPVRVP GVVPFVWEQT PGQPKDGSVR SSNVKPLVAP
101: KPPPGNSVRT RKAVTFASDY VTARSSESPK DDPKIVEGEN VDKEEKVGKK PEHQPVLAVD NREEEVEEDD DDNDAFSDAL DTLSRTDSML MNCSVSGLSG
201: VPEAAKLSGR FPKDPPVRDF MLERFLPAAQ AMACESPQYA FRKATAPPRE AIKPTDRVLI SDNRRPAPIP YQNKPDYVPH YAKELEQVDS YDDDEEDEEY
301: YQDAGNLSSK ACGLLPKFCL KSSFCLLNPV PVMKVQRHLR RPPRGRTGNP QIRNMHPLSH SRVEEEPSWG AVFRHKLEQE HQAQVAELSR FRSESDSLTP
401: DGSSPYQHSV TSPYQSEGPP TSLHEEKGPL GVVSRESKSS KADGSDVGEK VVENHWEINH SSQMGSGTMS PAPEKTLYVD VENRLGSSDS KSSSFNTVKD
501: TRSMTSSGEV GTESKRMEES LVAKVHERDA LHPEVCNVAE PVLPFTLKKL NHGYINGDTD LKHGYKDSDP PNLKSNRNPL QSLLPPPLPK SPSESWLSRT
601: LPSVASKNPA PQSLLGIQLH PRKQTLHVSS IDVIQETTIK PSKPRHRQIR FAEVLAKPES PKSEI
101: KPPPGNSVRT RKAVTFASDY VTARSSESPK DDPKIVEGEN VDKEEKVGKK PEHQPVLAVD NREEEVEEDD DDNDAFSDAL DTLSRTDSML MNCSVSGLSG
201: VPEAAKLSGR FPKDPPVRDF MLERFLPAAQ AMACESPQYA FRKATAPPRE AIKPTDRVLI SDNRRPAPIP YQNKPDYVPH YAKELEQVDS YDDDEEDEEY
301: YQDAGNLSSK ACGLLPKFCL KSSFCLLNPV PVMKVQRHLR RPPRGRTGNP QIRNMHPLSH SRVEEEPSWG AVFRHKLEQE HQAQVAELSR FRSESDSLTP
401: DGSSPYQHSV TSPYQSEGPP TSLHEEKGPL GVVSRESKSS KADGSDVGEK VVENHWEINH SSQMGSGTMS PAPEKTLYVD VENRLGSSDS KSSSFNTVKD
501: TRSMTSSGEV GTESKRMEES LVAKVHERDA LHPEVCNVAE PVLPFTLKKL NHGYINGDTD LKHGYKDSDP PNLKSNRNPL QSLLPPPLPK SPSESWLSRT
601: LPSVASKNPA PQSLLGIQLH PRKQTLHVSS IDVIQETTIK PSKPRHRQIR FAEVLAKPES PKSEI
001: MLMGSLMMEE KQLDFNRPLI SIRRPTQTSE SESKTRSFDS VTNMIPPSPP VYKSDIKSGP VRNPGTVPFQ WEHKPGKPKD ERKPVLQSFV EPHFVPKLPP
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES
Arabidopsis Description
Protein of unknown function (DUF688) [Source:TAIR;Acc:AT2G30990]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.