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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400052652 Potato nucleus 88.07 52.72
KRH22276 Soybean nucleus 21.31 45.18
KRH74883 Soybean nucleus 37.5 42.58
KRH04495 Soybean nucleus 34.38 38.78
Solyc12g013960.1.1 Tomato nucleus 50.57 28.99
KRH27055 Soybean nucleus 42.05 26.38
VIT_12s0028g02110.t01 Wine grape nucleus 45.74 23.75
GSMUA_Achr1P04800_001 Banana nucleus 34.38 23.22
KRH55736 Soybean nucleus 44.6 22.85
KRH25783 Soybean nucleus 43.18 21.5
GSMUA_Achr9P06400_001 Banana nucleus 38.35 20.3
AT2G30990.4 Thale cress nucleus 33.81 20.07
CDY52694 Canola nucleus 25.85 19.36
CDY58982 Canola nucleus 28.69 18.88
Bra021686.1-P Field mustard nucleus 28.69 18.88
GSMUA_Achr6P26820_001 Banana nucleus 34.66 18.6
CDX97772 Canola extracellular, vacuole 29.26 18.43
CDY10767 Canola nucleus 20.17 16.67
Os01t0758900-01 Rice nucleus 30.4 15.69
TraesCS3D01G295500.1 Wheat nucleus 29.55 15.36
TraesCS3A01G306400.2 Wheat nucleus 30.4 15.2
Zm00001d043395_P002 Maize nucleus 28.69 14.85
Solyc02g076680.2.1 Tomato nucleus 29.26 14.82
EES01501 Sorghum nucleus 28.69 14.68
Bra018284.1-P Field mustard nucleus 20.17 14.61
TraesCS3B01G330200.2 Wheat cytosol, nucleus, plastid 28.69 14.17
Protein Annotations
EnsemblPlants:Solyc07g055140.2.1EnsemblPlantsGene:Solyc07g055140.2InterPro:DUF688PANTHER:PTHR33671PANTHER:PTHR33671:SF2PFAM:PF05097
SEG:segUniParc:UPI000276C81EUniProt:K4CG53MapMan:35.2::
Description
No Description!
Coordinates
chr7:+:63275118..63276799
Molecular Weight (calculated)
39196.0 Da
IEP (calculated)
6.882
GRAVY (calculated)
-0.827
Length
352 amino acids
Sequence
(BLAST)
001: MEDKQLNLDQ PFLSVRRASP TVASGSDETK KTEYSLPSVT HPPRYKSELK SGPVRNPGVV PFRWEQSPGK PKYESKRQIR ATEKPPIAPR LPPGRKLKDI
101: QDSDKAHESQ NVSESQTGNA QHFTPSCMNL DEKVKKIESI DCSKDMIQDM EKCDSEDADE VYLDASNTLS RTESFFVNCS VSGLSGLDEP EAKLSGTSLR
201: DPQARDFMID RFLPAAKAMA SEKSLETPQY APRKQPAVQE QPRQLKKVLN GDKRPQLRYG PSFALRYSQF HDNYEEESDD DSCYDGNLPT KVCGLLPRFC
301: LKSSFCLMNP IPGMSARTRV PMSPASRTQT GSSSTASCSG SENEPLMLSV QI
Best Arabidopsis Sequence Match ( AT2G30990.2 )
(BLAST)
001: MLMGSLMMEE KQLDFNRPLI SIRRPTQTSE SESKTRSFDS VTNMIPPSPP VYKSDIKSGP VRNPGTVPFQ WEHKPGKPKD ERKPVLQSFV EPHFVPKLPP
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES
Arabidopsis Description
Protein of unknown function (DUF688) [Source:TAIR;Acc:AT2G30990]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.