CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH16959
KRH18664
KRH53667
KRH64261
KRH65384
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29240.1	KRH65384	AT3G60600.1	21798944
AT1G29240.1	KRH76164	AT3G60600.1	21798944
AT4G18630.1	KRH16959	AT3G49580.1	21798944
AT4G18630.1	KRH53667	AT3G49580.1	21798944
AT4G18630.1	KRH64261	AT3G49580.1	21798944
AT4G18630.1	KRG89812	AT5G21274.1	17360592
AT4G18630.1	KRG94975	AT5G21274.1	17360592
AT4G18630.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21261	Soybean	cytosol, mitochondrion, plastid	47.71	81.57
KRH42875	Soybean	nucleus	55.69	55.85
KRH58978	Soybean	nucleus	55.1	55.75
CDX90178	Canola	nucleus	25.11	33.4
CDX94655	Canola	mitochondrion	23.63	32.92
Bra030129.1-P	Field mustard	mitochondrion, nucleus, plastid	23.49	32.72
CDY43328	Canola	nucleus	24.67	32.68
CDY15640	Canola	mitochondrion, nucleus, plastid	21.86	32.46
Bra010842.1-P	Field mustard	nucleus	24.52	31.8
KRH22276	Soybean	nucleus	7.68	31.33
AT1G29240.1	Thale cress	nucleus	25.85	30.33
KRH74883	Soybean	nucleus	13.74	30.0
PGSC0003DMT400026504	Potato	nucleus	30.72	29.97
Solyc02g076680.2.1	Tomato	nucleus	30.72	29.93
CDY63140	Canola	nucleus	21.42	29.65
CDY17227	Canola	nucleus	21.12	29.18
KRH04495	Soybean	nucleus	13.29	28.85
GSMUA_Achr1P04800_001	Banana	nucleus	22.16	28.79
AT2G34170.3	Thale cress	nucleus	22.16	28.68
VIT_10s0003g01370.t01	Wine grape	plastid	33.38	28.54
Bra021994.1-P	Field mustard	nucleus	16.84	27.74
AT5G45850.1	Thale cress	nucleus	18.02	27.42
Bra013335.1-P	Field mustard	nucleus	18.61	26.53
CDX78880	Canola	nucleus	18.61	26.42
Bra005448.1-P	Field mustard	nucleus	20.53	26.38
CDX99449	Canola	nucleus	18.32	26.27
Bra012583.1-P	Field mustard	plastid	17.43	26.11
CDY06031	Canola	nucleus	16.84	26.09
GSMUA_Achr6P26820_001	Banana	nucleus	25.11	25.91
KRH27055	Soybean	nucleus	21.12	25.49
CDX87761	Canola	nucleus	16.25	25.4
CDY01559	Canola	nucleus, plastid	16.4	24.89
GSMUA_Achr9P06400_001	Banana	nucleus	24.37	24.81
KRH25783	Soybean	nucleus	25.55	24.47
CDY53997	Canola	plastid	15.21	24.47
AT4G18630.1	Thale cress	nucleus	17.13	24.22
KRH55736	Soybean	nucleus	24.22	23.87
TraesCS3D01G295500.1	Wheat	nucleus	22.75	22.75
TraesCS3A01G306400.2	Wheat	nucleus	23.34	22.44
EES01501	Sorghum	nucleus	22.75	22.38
Os01t0758900-01	Rice	nucleus	22.16	21.99
Zm00001d043395_P002	Maize	nucleus	21.71	21.62
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	22.45	21.32

Protein Annotations

EMBL:ACUP02009173	EnsemblPlants:KRH11026	EnsemblPlantsGene:GLYMA_15G083500	EntrezGene:100786935	InterPro:DUF688	PANTHER:PTHR33671
PANTHER:PTHR33671:SF3	PFAM:PF05097	ProteinID:KRH11026	ProteinID:KRH11026.1	ProteinID:KRH11027.1	SEG:seg
UniParc:UPI000233BA43	UniProt:I1MES9	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:6381987..6386260

Molecular Weight (calculated)

74626.5 Da

IEP (calculated)

10.003

GRAVY (calculated)

-0.801

Length

677 amino acids

Sequence
(BLAST)

001: MAERRLNINA PLMSVRRSAA TPPSLTEAKK KILEKRHTLP YYKSDTFSDQ VTEPVAVPFN WEHIPGRRKG NGGSEPQPPK ATSITPSPRL PPGKSINATK
101: QPLEKESKAA NKSKSFNVSV VKVDSDKERK VEKIVESRRS NVKYDDDDDN DDNDAYSDAL ENLSPTESFS MNCSVSGVSG LENLGANKSG SFSTDQQTRD
201: FMMSRFLPAA KAMTLLPPQY SSKKQSALVE QQPRDVSKLV RDDKKQLPIK HNTAIIPYTG QNQEEESEDE VDDNEYDNSS NIAAKGCGLL PQLHIRNSLC
301: LLNPVAVMKM KNQAPLPPAS EVVKPNKSSH IRSFSPVPAV KKAWEAIHKN KSSSRAASPD KQEGKKKWTS ESNRFTYSGE LLPGRLSPFR RSRAAAAGIS
401: PCRSKPQSPF RGAKLPGDTK EAENYKFGKV KFHSGVLGNV HDVPSQGAKR TSYSGNLTIE KTLYIDTAST AKLSSSNISS LDNNRRVDTV VADLDRRRGK
501: IGSSQEIKQV RAVEEKVTFD TDVLSAFDSI PPSLYRILNL TAKEERDEGL TTDQNISQEP VSLQSVQGTF AEDPKTNTQQ IVLANDSGKG SAVSAVSPLP
601: PPLPKSPSES WLWRALPLVS VKNSFLHSSQ GTQSQAKRHD SNTTSGNLKW ETIVKTSNLH QDHVRYSQEL PTRKSQH

Best Arabidopsis Sequence Match ( AT1G29240.1 )
(BLAST)

001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT

Arabidopsis Description

F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.