Skip to main content
crop-pal logo
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • plastid 2
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G62420.1 PGSC0003DMT400004821 AT1G13600.1 16709202
AT3G62420.1 PGSC0003DMT400019465 AT1G13600.1 16709202
AT3G62420.1 PGSC0003DMT400009068 AT2G18160.1 16709202
AT3G62420.1 PGSC0003DMT400040054 AT2G18160.1 16709202
AT3G62420.1 PGSC0003DMT400058187 AT2G18160.1 16709202
AT3G62420.1 PGSC0003DMT400009068 AT2G18160.1 16810321
AT3G62420.1 PGSC0003DMT400040054 AT2G18160.1 16810321
AT3G62420.1 PGSC0003DMT400058187 AT2G18160.1 16810321
AT3G62420.1 PGSC0003DMT400014123 AT2G41090.1 17360592
AT3G62420.1 PGSC0003DMT400018569 AT2G41090.1 17360592
AT3G62420.1 PGSC0003DMT400046278 AT2G41090.1 17360592
AT3G62420.1 PGSC0003DMT400054299 AT2G41090.1 17360592
AT3G62420.1 PGSC0003DMT400058435 AT2G41090.1 17360592
AT3G62420.1 PGSC0003DMT400070437 AT2G41090.1 17360592
AT3G62420.1 PGSC0003DMT400097662 AT2G41090.1 17360592
AT3G62420.1 PGSC0003DMT400014123 AT2G41100.1 17360592
AT3G62420.1 PGSC0003DMT400018569 AT2G41100.1 17360592
AT3G62420.1 PGSC0003DMT400046278 AT2G41100.1 17360592
AT3G62420.1 PGSC0003DMT400054299 AT2G41100.1 17360592
AT3G62420.1 PGSC0003DMT400058435 AT2G41100.1 17360592
AT3G62420.1 PGSC0003DMT400070437 AT2G41100.1 17360592
AT3G62420.1 PGSC0003DMT400097662 AT2G41100.1 17360592
AT3G62420.1 PGSC0003DMT400018832 AT3G62420.1 16709202
AT3G62420.1 PGSC0003DMT400088166 AT3G62420.1 16709202
AT3G62420.1 PGSC0003DMT400009493 AT4G34590.1 16709202
AT3G62420.1 PGSC0003DMT400009493 AT4G34590.1 16810321
AT3G62420.1 PGSC0003DMT400014123 AT5G21274.1 17360592
AT3G62420.1 PGSC0003DMT400018569 AT5G21274.1 17360592
AT3G62420.1 PGSC0003DMT400046278 AT5G21274.1 17360592
AT3G62420.1 PGSC0003DMT400054299 AT5G21274.1 17360592
AT3G62420.1 PGSC0003DMT400058435 AT5G21274.1 17360592
AT3G62420.1 PGSC0003DMT400070437 AT5G21274.1 17360592
AT3G62420.1 PGSC0003DMT400097662 AT5G21274.1 17360592
AT3G62420.1 PGSC0003DMT400038493 AT5G24800.1 16709202
AT3G62420.1 PGSC0003DMT400038493 AT5G24800.1 16810321
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g009640.1.1 Tomato nucleus 93.75 93.75
PGSC0003DMT400088166 Potato nucleus 77.08 77.08
GSMUA_Achr8P22330_001 Banana nucleus 52.78 52.78
Bra007679.1-P Field mustard nucleus 51.39 52.48
CDX76636 Canola nucleus 51.39 52.48
CDY11421 Canola nucleus 51.39 52.48
PGSC0003DMT400085559 Potato nucleus 50.0 52.17
PGSC0003DMT400007165 Potato nucleus 50.0 52.17
GSMUA_Achr11P... Banana nucleus 52.08 52.08
AT3G62420.1 Thale cress nucleus 52.78 52.05
Bra003500.1-P Field mustard nucleus 47.92 51.49
CDX67893 Canola nucleus 47.92 51.49
CDY25111 Canola nucleus 47.92 51.49
VIT_07s0005g01450.t01 Wine grape nucleus 51.39 51.03
GSMUA_Achr11P... Banana nucleus 47.22 48.92
KRH68258 Soybean nucleus 49.31 47.33
KRG96525 Soybean nucleus 49.31 47.33
KRH31798 Soybean nucleus 48.61 46.05
GSMUA_Achr8P29960_001 Banana nucleus 45.83 45.83
PGSC0003DMT400009068 Potato nucleus 45.14 45.14
KRH69221 Soybean nucleus 45.83 44.3
PGSC0003DMT400009493 Potato nucleus 40.97 39.33
PGSC0003DMT400040054 Potato nucleus 34.03 37.12
KRH65972 Soybean nucleus 31.25 36.89
PGSC0003DMT400043542 Potato nucleus 40.28 36.48
PGSC0003DMT400058187 Potato nucleus 40.97 35.54
PGSC0003DMT400079474 Potato nucleus 40.28 34.94
Os09t0306400-01 Rice nucleus 36.81 34.64
HORVU5Hr1G054510.1 Barley nucleus 35.42 33.12
TraesCS5B01G176700.1 Wheat nucleus 34.72 32.68
TraesCS5D01G183500.1 Wheat nucleus 34.72 32.47
EER96530 Sorghum nucleus 35.42 32.08
TraesCS5A01G179000.1 Wheat nucleus 34.03 31.82
Zm00001d005578_P001 Maize nucleus 34.03 28.82
Zm00001d030577_P001 Maize nucleus 30.56 27.85
EES14897 Sorghum nucleus, plastid 32.64 26.7
Os08t0357300-01 Rice cytosol 15.28 19.47
Zm00001d020025_P001 Maize endoplasmic reticulum, extracellular 15.28 18.18
Protein Annotations
Gene3D:1.20.5.170EntrezGene:102595254MapMan:15.5.4.1ncoils:CoilGO:GO:0003674GO:GO:0003700
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:IPR004827UniProt:M1AB76PFAM:PF00170EnsemblPlantsGene:PGSC0003DMG400007301PGSC:PGSC0003DMG400007301EnsemblPlants:PGSC0003DMT400018832
ScanProsite:PS00036PFscan:PS50217PANTHER:PTHR22952PANTHER:PTHR22952:SF167SMART:SM00338SUPFAM:SSF57959
UniParc:UPI0002969E46RefSeq:XP_006355836.1InterPro:bZIP:::
Description
TBZ17 [Source:PGSC_GENE;Acc:PGSC0003DMG400007301]
Coordinates
chr6:+:193479..194628
Molecular Weight (calculated)
16589.5 Da
IEP (calculated)
5.969
GRAVY (calculated)
-0.852
Length
144 amino acids
Sequence
(BLAST)
001: MASTPQLVSS GSDADQRYAK FDERKRKRME SNRESAKRSR MKKQQRLKEL SSETTQLQNQ NSICHDKIDS VERNYRAIDA ENNVLRAQLA ELTERLNSLN
101: SLTQFWADAT GFPVDIPEIP DSLLEPWQLP CPIQPITASD MFQF
Best Arabidopsis Sequence Match ( AT3G62420.1 )
(BLAST)
001: MGSLQMQTSP ESDNDPRYAT VTDERKRKRM ISNRESARRS RMRKQKQLGD LINEVTLLKN DNAKITEQVD EASKKYIEME SKNNVLRAQA SELTDRLRSL
101: NSVLEMVEEI SGQALDIPEI PESMQNPWQM PCPMQPIRAS ADMFDC
Arabidopsis Description
BZIP53bZIP transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.