Factsheet for VIT_07s0005g01450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00930.t01
VIT_04s0008g02750.t01
VIT_04s0023g02430.t01
VIT_06s0009g01910.t01
VIT_07s0005g01450.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62420.1	VIT_01s0010g00930.t01	AT1G13600.1	16709202
AT3G62420.1	VIT_04s0023g02430.t01	AT2G18160.1	16709202
AT3G62420.1	VIT_04s0023g02430.t01	AT2G18160.1	16810321
AT3G62420.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT3G62420.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT3G62420.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT3G62420.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT3G62420.1	VIT_07s0005g01450.t01	AT3G62420.1	16709202
AT3G62420.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT3G62420.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592
AT3G62420.1	VIT_04s0008g02750.t01	AT5G24800.1	16709202
AT3G62420.1	VIT_04s0008g02750.t01	AT5G24800.1	16810321

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079480.2.1	Tomato	nucleus	52.41	52.78
GSMUA_Achr11P...	Banana	nucleus	52.41	52.78
GSMUA_Achr8P22330_001	Banana	nucleus	51.72	52.08
GSMUA_Achr11P...	Banana	nucleus	49.66	51.8
Bra003500.1-P	Field mustard	nucleus	47.59	51.49
CDY25111	Canola	nucleus	47.59	51.49
CDX67893	Canola	nucleus	47.59	51.49
PGSC0003DMT400088166	Potato	nucleus	51.03	51.39
PGSC0003DMT400018832	Potato	nucleus	51.03	51.39
AT3G62420.1	Thale cress	nucleus	51.72	51.37
CDX76636	Canola	nucleus	49.66	51.06
Solyc06g009640.1.1	Tomato	nucleus	50.34	50.69
CDY11421	Canola	nucleus	48.97	50.35
Bra007679.1-P	Field mustard	nucleus	48.97	50.35
KRG96525	Soybean	nucleus	51.03	49.33
KRH68258	Soybean	nucleus	51.03	49.33
VIT_14s0060g01210.t01	Wine grape	nucleus	48.97	48.97
GSMUA_Achr8P29960_001	Banana	nucleus	46.9	47.22
KRH31798	Soybean	nucleus	44.14	42.11
KRH69221	Soybean	nucleus	42.76	41.61
VIT_03s0038g04450.t01	Wine grape	nucleus	43.45	40.13
KRH65972	Soybean	nucleus	31.72	37.7
VIT_05s0077g01140.t01	Wine grape	nucleus	40.0	37.66
VIT_18s0001g13040.t01	Wine grape	nucleus	38.62	36.36
VIT_04s0023g02430.t01	Wine grape	nucleus	35.86	33.12
Os09t0306400-01	Rice	nucleus	31.72	30.07
EER96530	Sorghum	nucleus	31.72	28.93
TraesCS5D01G183500.1	Wheat	nucleus	30.34	28.57
TraesCS5B01G176700.1	Wheat	nucleus	29.66	28.1
HORVU5Hr1G054510.1	Barley	nucleus	29.66	27.92
TraesCS5A01G179000.1	Wheat	nucleus	28.97	27.27
Zm00001d005578_P001	Maize	nucleus	31.03	26.47
Zm00001d030577_P001	Maize	nucleus	28.28	25.95
EES14897	Sorghum	nucleus, plastid	29.66	24.43
Os08t0357300-01	Rice	cytosol	15.86	20.35
Zm00001d020025_P001	Maize	endoplasmic reticulum, extracellular	13.1	15.7

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100257331	wikigene:100257331	MapMan:15.5.4.1	ProteinID:CCB60014	ProteinID:CCB60014.1
ncoils:Coil	UniProt:F6HZ99	EMBL:FN596502	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0006971
GO:GO:0007154	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009267
GO:GO:0009605	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0009991	GO:GO:0043565
GO:GO:0045893	GO:GO:0046982	GO:GO:2000693	InterPro:IPR004827	EMBL:KX073969	EntrezGene:LOC100257331
wikigene:LOC100257331	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF167
SMART:SM00338	SUPFAM:SSF57959	TIGR:TC62840	UniParc:UPI00015CB21E	ArrayExpress:VIT_07s0005g01450	EnsemblPlantsGene:VIT_07s0005g01450
EnsemblPlants:VIT_07s0005g01450.t01	RefSeq:XP_002276485	RefSeq:XP_002276485.1	InterPro:bZIP	:	:

Description

Basic region/leucine zipper motif C22 protein [Source:UniProtKB/TrEMBL;Acc:F6HZ99]

Coordinates

chr7:+:3987031..3988120

Molecular Weight (calculated)

16556.0 Da

IEP (calculated)

5.272

GRAVY (calculated)

-0.567

Length

145 amino acids

Sequence
(BLAST)

001: MSAMQQQLGS APNWGEPKIA VIDDRKRKRM QSNRESAKRS RIRKQQHLDD LLSKAAQLQK ENGQIAERID KTTELYIKIA SDNNVLNAQI VELTDRLQSL
101: NSVLQIVEEV NGLAVDIPEM PDDLLEPWQL PCPMPIMYPA NMFQC

Best Arabidopsis Sequence Match ( AT3G62420.1 )
(BLAST)

001: MGSLQMQTSP ESDNDPRYAT VTDERKRKRM ISNRESARRS RMRKQKQLGD LINEVTLLKN DNAKITEQVD EASKKYIEME SKNNVLRAQA SELTDRLRSL
101: NSVLEMVEEI SGQALDIPEI PESMQNPWQM PCPMQPIRAS ADMFDC

Arabidopsis Description

BZIP53bZIP transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.