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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000214.1-P
Bra002368.1-P
Bra003500.1-P
Bra003755.1-P
Bra006595.1-P
Bra007679.1-P
Bra008192.1-P
Bra009793.1-P
Bra010035.1-P
Bra011545.1-P
Bra015847.1-P
Bra017664.1-P
Bra018296.1-P
Bra019715.1-P
Bra020471.1-P
Bra024478.1-P
Bra026895.1-P
Bra026896.1-P
Bra033467.1-P
Bra034639.1-P
Bra037235.1-P
Bra039631.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G62420.1 Bra019715.1-P AT1G13600.1 16709202
AT3G62420.1 Bra026895.1-P AT1G13600.1 16709202
AT3G62420.1 Bra026896.1-P AT1G13600.1 16709202
AT3G62420.1 Bra003755.1-P AT1G75390.1 16709202
AT3G62420.1 Bra008192.1-P AT1G75390.1 16709202
AT3G62420.1 Bra015847.1-P AT1G75390.1 16709202
AT3G62420.1 Bra003755.1-P AT1G75390.1 16810321
AT3G62420.1 Bra008192.1-P AT1G75390.1 16810321
AT3G62420.1 Bra015847.1-P AT1G75390.1 16810321
AT3G62420.1 Bra024478.1-P AT2G18160.1 16709202
AT3G62420.1 Bra037235.1-P AT2G18160.1 16709202
AT3G62420.1 Bra039631.1-P AT2G18160.1 16709202
AT3G62420.1 Bra024478.1-P AT2G18160.1 16810321
AT3G62420.1 Bra037235.1-P AT2G18160.1 16810321
AT3G62420.1 Bra039631.1-P AT2G18160.1 16810321
AT3G62420.1 Bra000214.1-P AT2G41090.1 17360592
AT3G62420.1 Bra000214.1-P AT2G41100.1 17360592
AT3G62420.1 Bra018296.1-P AT3G51920.1 17360592
AT3G62420.1 Bra033467.1-P AT3G51920.1 17360592
AT3G62420.1 Bra003500.1-P AT3G62420.1 16709202
AT3G62420.1 Bra007679.1-P AT3G62420.1 16709202
AT3G62420.1 Bra011545.1-P AT4G34590.1 16709202
AT3G62420.1 Bra017664.1-P AT4G34590.1 16709202
AT3G62420.1 Bra034639.1-P AT4G34590.1 16709202
AT3G62420.1 Bra011545.1-P AT4G34590.1 16810321
AT3G62420.1 Bra017664.1-P AT4G34590.1 16810321
AT3G62420.1 Bra034639.1-P AT4G34590.1 16810321
AT3G62420.1 Bra002368.1-P AT5G21274.1 17360592
AT3G62420.1 Bra006595.1-P AT5G21274.1 17360592
AT3G62420.1 Bra009793.1-P AT5G24800.1 16709202
AT3G62420.1 Bra020471.1-P AT5G24800.1 16709202
AT3G62420.1 Bra009793.1-P AT5G24800.1 16810321
AT3G62420.1 Bra020471.1-P AT5G24800.1 16810321
AT3G62420.1 Bra010035.1-P AT5G49450.1 16709202
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY11421 Canola nucleus 99.29 99.29
AT3G62420.1 Thale cress nucleus 91.49 88.36
Bra003500.1-P Field mustard nucleus 83.69 88.06
GSMUA_Achr11P... Banana nucleus 57.45 56.25
GSMUA_Achr8P22330_001 Banana nucleus 55.32 54.17
KRH68258 Soybean nucleus 56.03 52.67
KRG96525 Soybean nucleus 56.03 52.67
GSMUA_Achr11P... Banana nucleus 51.77 52.52
Solyc01g079480.2.1 Tomato nucleus 52.48 51.39
PGSC0003DMT400018832 Potato nucleus 52.48 51.39
PGSC0003DMT400088166 Potato nucleus 51.06 50.0
Solyc06g009640.1.1 Tomato nucleus 51.06 50.0
GSMUA_Achr8P29960_001 Banana nucleus 51.06 50.0
VIT_07s0005g01450.t01 Wine grape nucleus 50.35 48.97
KRH69221 Soybean nucleus 51.06 48.32
KRH31798 Soybean nucleus 49.65 46.05
KRH65972 Soybean nucleus 34.75 40.16
Bra034639.1-P Field mustard nucleus 40.43 40.14
Bra037235.1-P Field mustard nucleus, plastid 44.68 37.5
Bra024478.1-P Field mustard nucleus 41.13 37.42
Bra039631.1-P Field mustard nucleus 43.26 36.31
Bra008192.1-P Field mustard nucleus 41.84 35.76
Bra017664.1-P Field mustard nucleus 37.59 34.64
Bra003755.1-P Field mustard nucleus 43.26 34.08
Bra011545.1-P Field mustard nucleus 41.13 32.4
Os09t0306400-01 Rice nucleus 34.04 31.37
HORVU5Hr1G054510.1 Barley nucleus 31.91 29.22
TraesCS5A01G179000.1 Wheat nucleus 31.91 29.22
TraesCS5D01G183500.1 Wheat nucleus 31.91 29.22
EER96530 Sorghum nucleus 32.62 28.93
TraesCS5B01G176700.1 Wheat nucleus 31.21 28.76
Zm00001d005578_P001 Maize nucleus 31.91 26.47
Os08t0357300-01 Rice cytosol 19.15 23.89
EES14897 Sorghum nucleus, plastid 29.79 23.86
Zm00001d030577_P001 Maize nucleus 24.82 22.15
Bra015847.1-P Field mustard nucleus 38.3 15.08
Zm00001d020025_P001 Maize endoplasmic reticulum, extracellular 12.06 14.05
Protein Annotations
Gene3D:1.20.5.170MapMan:15.5.4.1EnsemblPlantsGene:Bra007679EnsemblPlants:Bra007679.1EnsemblPlants:Bra007679.1-Pncoils:Coil
GO:GO:0003674GO:GO:0003700GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987InterPro:IPR004827UniProt:M4CTY5PFAM:PF00170ScanProsite:PS00036
PFscan:PS50217PANTHER:PTHR22952PANTHER:PTHR22952:SF167SMART:SM00338SUPFAM:SSF57959UniParc:UPI0002542AC6
InterPro:bZIP:::::
Description
AT3G62420 (E=3e-068) ATBZIP53 | ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53); DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factor
Coordinates
chrA09:-:30366279..30366704
Molecular Weight (calculated)
16185.2 Da
IEP (calculated)
6.719
GRAVY (calculated)
-0.851
Length
141 amino acids
Sequence
(BLAST)
001: MGSLQRQTSP ESDNDPRYAA VTDERKRKRM ISNRESARRS RMRKQKQLGD LINEVTVLKN DNAKITEQVD AATRKYVEME SRNDVLRAQA SELTERLRSL
101: NSVLEMVEEI SGQALDIPEI NPWQVSCPMQ PIRASADMFD C
Best Arabidopsis Sequence Match ( AT3G62420.1 )
(BLAST)
001: MGSLQMQTSP ESDNDPRYAT VTDERKRKRM ISNRESARRS RMRKQKQLGD LINEVTLLKN DNAKITEQVD EASKKYIEME SKNNVLRAQA SELTDRLRSL
101: NSVLEMVEEI SGQALDIPEI PESMQNPWQM PCPMQPIRAS ADMFDC
Arabidopsis Description
BZIP53bZIP transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.