Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 63.89 | 63.89 |
| GSMUA_Achr8P22330_001 | Banana | nucleus | 59.03 | 59.03 |
| GSMUA_Achr11P... | Banana | nucleus | 56.25 | 58.27 |
| Bra003500.1-P | Field mustard | nucleus | 47.92 | 51.49 |
| CDY25111 | Canola | nucleus | 47.92 | 51.49 |
| CDX67893 | Canola | nucleus | 47.92 | 51.49 |
| CDY11421 | Canola | nucleus | 50.0 | 51.06 |
| CDX76636 | Canola | nucleus | 50.0 | 51.06 |
| Bra007679.1-P | Field mustard | nucleus | 50.0 | 51.06 |
| GSMUA_Achr5P27130_001 | Banana | nucleus | 49.31 | 48.97 |
| AT3G62420.1 | Thale cress | nucleus | 49.31 | 48.63 |
| KRG96525 | Soybean | nucleus | 49.31 | 47.33 |
| VIT_07s0005g01450.t01 | Wine grape | nucleus | 47.22 | 46.9 |
| KRH68258 | Soybean | nucleus | 48.61 | 46.67 |
| Solyc01g079480.2.1 | Tomato | nucleus | 46.53 | 46.53 |
| PGSC0003DMT400088166 | Potato | nucleus | 46.53 | 46.53 |
| PGSC0003DMT400018832 | Potato | nucleus | 45.83 | 45.83 |
| Solyc06g009640.1.1 | Tomato | nucleus | 45.14 | 45.14 |
| GSMUA_Achr6P08660_001 | Banana | nucleus | 43.06 | 44.6 |
| VIT_14s0060g01210.t01 | Wine grape | nucleus | 44.44 | 44.14 |
| KRH69221 | Soybean | nucleus | 45.14 | 43.62 |
| KRH31798 | Soybean | nucleus | 45.14 | 42.76 |
| GSMUA_Achr4P03790_001 | Banana | nucleus | 44.44 | 42.67 |
| Solyc01g100460.2.1 | Tomato | nucleus | 40.28 | 42.03 |
| PGSC0003DMT400085559 | Potato | nucleus | 39.58 | 41.3 |
| PGSC0003DMT400007165 | Potato | nucleus | 39.58 | 41.3 |
| GSMUA_Achr10P... | Banana | nucleus | 43.06 | 40.26 |
| GSMUA_Achr3P24300_001 | Banana | nucleus | 37.5 | 39.71 |
| GSMUA_Achr4P06440_001 | Banana | nucleus | 42.36 | 38.85 |
| GSMUA_Achr1P12710_001 | Banana | nucleus | 38.89 | 38.62 |
| KRH65972 | Soybean | nucleus | 32.64 | 38.52 |
| GSMUA_Achr1P25340_001 | Banana | nucleus | 38.89 | 38.1 |
| GSMUA_Achr2P06540_001 | Banana | nucleus | 38.89 | 37.33 |
| GSMUA_Achr3P28710_001 | Banana | nucleus | 38.89 | 37.09 |
| GSMUA_Achr10P... | Banana | nucleus | 40.28 | 36.48 |
| GSMUA_Achr3P28800_001 | Banana | nucleus | 38.19 | 36.42 |
| VIT_05s0077g01140.t01 | Wine grape | nucleus | 36.81 | 34.42 |
| GSMUA_Achr11P... | Banana | mitochondrion | 38.89 | 30.77 |
| GSMUA_Achr4P11290_001 | Banana | nucleus | 38.19 | 30.73 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr8G29960_001 |
| EnsemblPlants:GSMUA_Achr8P29960_001 | EnsemblPlants:GSMUA_Achr8T29960_001 | InterPro:IPR004827 | UniProt:M0TUU8 | PFAM:PF00170 | ScanProsite:PS00036 |
| PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF167 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI00029681E0 |
| InterPro:bZIP | : | : | : | : | : |
Description
Ocs element-binding factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G29960_001]
Coordinates
chr8:-:32180908..32181342
Molecular Weight (calculated)
16611.1 Da
IEP (calculated)
10.178
GRAVY (calculated)
-0.620
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSYAIYRPS ASEVDAQPAI DERKRKRMIS NRESARRSRM RKQQQLDDLT NQVAQLKTQN GQIEMQISLQ RRQYTTVEVE NAILRAQLHE LTQRLQSLAP
101: VLGITEEIGG MAMGRPEIPA HLLRPWQLPY SERVIVATDN MLPF
101: VLGITEEIGG MAMGRPEIPA HLLRPWQLPY SERVIVATDN MLPF
001: MGSLQMQTSP ESDNDPRYAT VTDERKRKRM ISNRESARRS RMRKQKQLGD LINEVTLLKN DNAKITEQVD EASKKYIEME SKNNVLRAQA SELTDRLRSL
101: NSVLEMVEEI SGQALDIPEI PESMQNPWQM PCPMQPIRAS ADMFDC
101: NSVLEMVEEI SGQALDIPEI PESMQNPWQM PCPMQPIRAS ADMFDC
Arabidopsis Description
BZIP53bZIP transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.