Factsheet for Solyc06g009640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc01g079480.2.1
Solyc02g084860.1.1
Solyc03g033730.1.1
Solyc04g005170.1.1
Solyc04g080740.1.1
Solyc06g009640.1.1
Solyc08g006110.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62420.1	Solyc04g005170.1.1	AT1G13600.1	16709202
AT3G62420.1	Solyc02g084860.1.1	AT2G18160.1	16709202
AT3G62420.1	Solyc03g033730.1.1	AT2G18160.1	16709202
AT3G62420.1	Solyc02g084860.1.1	AT2G18160.1	16810321
AT3G62420.1	Solyc03g033730.1.1	AT2G18160.1	16810321
AT3G62420.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT3G62420.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT3G62420.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT3G62420.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT3G62420.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT3G62420.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT3G62420.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT3G62420.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT3G62420.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT3G62420.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT3G62420.1	Solyc01g079480.2.1	AT3G62420.1	16709202
AT3G62420.1	Solyc06g009640.1.1	AT3G62420.1	16709202
AT3G62420.1	Solyc04g080740.1.1	AT4G34590.1	16709202
AT3G62420.1	Solyc04g080740.1.1	AT4G34590.1	16810321
AT3G62420.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT3G62420.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT3G62420.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT3G62420.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT3G62420.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT3G62420.1	Solyc08g006110.2.1	AT5G24800.1	16709202
AT3G62420.1	Solyc08g006110.2.1	AT5G24800.1	16810321

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018832	Potato	nucleus	93.75	93.75
Solyc01g079480.2.1	Tomato	nucleus	76.39	76.39
GSMUA_Achr8P22330_001	Banana	nucleus	53.47	53.47
GSMUA_Achr11P...	Banana	nucleus	52.78	52.78
Solyc01g100460.2.1	Tomato	nucleus	49.31	51.45
Bra007679.1-P	Field mustard	nucleus	50.0	51.06
CDX76636	Canola	nucleus	50.0	51.06
CDY11421	Canola	nucleus	50.0	51.06
AT3G62420.1	Thale cress	nucleus	51.39	50.68
VIT_07s0005g01450.t01	Wine grape	nucleus	50.69	50.34
Bra003500.1-P	Field mustard	nucleus	46.53	50.0
CDY25111	Canola	nucleus	46.53	50.0
CDX67893	Canola	nucleus	46.53	50.0
GSMUA_Achr11P...	Banana	nucleus	45.83	47.48
KRG96525	Soybean	nucleus	49.31	47.33
KRH68258	Soybean	nucleus	49.31	47.33
KRH31798	Soybean	nucleus	48.61	46.05
GSMUA_Achr8P29960_001	Banana	nucleus	45.14	45.14
Solyc02g084860.1.1	Tomato	nucleus	44.44	44.44
KRH69221	Soybean	nucleus	45.83	44.3
Solyc03g033730.1.1	Tomato	nucleus	32.64	40.87
Solyc04g080740.1.1	Tomato	nucleus	40.97	40.14
KRH65972	Soybean	nucleus	31.25	36.89
Solyc01g109880.2.1	Tomato	nucleus	40.97	36.2
Os09t0306400-01	Rice	nucleus	36.81	34.64
Solyc10g054010.1.1	Tomato	nucleus	38.19	33.74
HORVU5Hr1G054510.1	Barley	nucleus	35.42	33.12
TraesCS5B01G176700.1	Wheat	nucleus	34.72	32.68
TraesCS5D01G183500.1	Wheat	nucleus	34.72	32.47
EER96530	Sorghum	nucleus	35.42	32.08
TraesCS5A01G179000.1	Wheat	nucleus	34.03	31.82
Zm00001d005578_P001	Maize	nucleus	34.03	28.82
Zm00001d030577_P001	Maize	nucleus	29.17	26.58
EES14897	Sorghum	nucleus, plastid	31.25	25.57
Os08t0357300-01	Rice	cytosol	15.28	19.47
Zm00001d020025_P001	Maize	endoplasmic reticulum, extracellular	14.58	17.36

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:K4C3Z4	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF167
SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc06g009640.1	EnsemblPlants:Solyc06g009640.1.1	UniParc:UPI0002766EC2	InterPro:bZIP

Description

No Description!

Coordinates

chr6:-:3585368..3585802

Molecular Weight (calculated)

16625.5 Da

IEP (calculated)

5.306

GRAVY (calculated)

-0.828

Length

144 amino acids

Sequence
(BLAST)

001: MSSTPHLVSS GSDADQRYAK FDERKRKRME SNRESAKRSR MKKQQRLEEL SSETTQLQNQ NSICRDKIAS VEMNYRSIDA ENNVLRAQLA ELTERLNSLN
101: SLTQFWADTT GFPVDIPEIP DTLLEPWQLP CPIQPITASD MFQF

Best Arabidopsis Sequence Match ( AT3G62420.1 )
(BLAST)

001: MGSLQMQTSP ESDNDPRYAT VTDERKRKRM ISNRESARRS RMRKQKQLGD LINEVTLLKN DNAKITEQVD EASKKYIEME SKNNVLRAQA SELTDRLRSL
101: NSVLEMVEEI SGQALDIPEI PESMQNPWQM PCPMQPIRAS ADMFDC

Arabidopsis Description

BZIP53bZIP transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.