Factsheet for Solyc04g080740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g079480.2.1
Solyc02g084860.1.1
Solyc03g033730.1.1
Solyc04g005170.1.1
Solyc04g080740.1.1
Solyc06g009640.1.1
Solyc07g053410.2.1
Solyc08g006110.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34590.1	Solyc04g005170.1.1	AT1G13600.1	16709202
AT4G34590.1	Solyc02g084860.1.1	AT2G18160.1	16709202
AT4G34590.1	Solyc03g033730.1.1	AT2G18160.1	16709202
AT4G34590.1	Solyc07g053410.2.1	AT2G31070.1	21245844
AT4G34590.1	Solyc01g079480.2.1	AT3G62420.1	16709202
AT4G34590.1	Solyc06g009640.1.1	AT3G62420.1	16709202
AT4G34590.1	Solyc01g079480.2.1	AT3G62420.1	16810321
AT4G34590.1	Solyc06g009640.1.1	AT3G62420.1	16810321
AT4G34590.1	Solyc04g080740.1.1	AT4G34590.1	16709202
AT4G34590.1	Solyc08g006110.2.1	AT5G24800.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009493	Potato	nucleus	93.88	92.0
Solyc02g084860.1.1	Tomato	nucleus	55.78	56.94
Solyc03g033730.1.1	Tomato	nucleus	41.5	53.04
AT4G34590.1	Thale cress	nucleus	55.78	51.57
Solyc01g109880.2.1	Tomato	nucleus	57.14	51.53
CDX76292	Canola	nucleus	49.66	51.41
Bra034639.1-P	Field mustard	nucleus	49.66	51.41
CDY17470	Canola	nucleus	48.98	50.7
CDY31528	Canola	nucleus	48.98	50.7
CDX69072	Canola	nucleus	53.06	50.65
CDX75445	Canola	nucleus	53.06	50.65
Solyc10g054010.1.1	Tomato	nucleus	55.1	49.69
CDX72490	Canola	nucleus	51.7	49.67
CDY45319	Canola	nucleus	51.02	49.02
Bra017664.1-P	Field mustard	nucleus	51.02	49.02
KRH51803	Soybean	nucleus, plastid	51.02	49.02
KRH61129	Soybean	nucleus, plastid	49.66	47.71
KRH15149	Soybean	nucleus	51.7	45.78
Solyc01g100460.2.1	Tomato	nucleus	41.5	44.2
Bra011545.1-P	Field mustard	nucleus	53.06	43.58
Solyc01g079480.2.1	Tomato	nucleus	42.18	43.06
Solyc06g009640.1.1	Tomato	nucleus	40.14	40.97
EER96530	Sorghum	nucleus	44.22	40.88
KRH05862	Soybean	nucleus	52.38	40.1
Os09t0306400-01	Rice	nucleus	40.82	39.22
HORVU5Hr1G054510.1	Barley	nucleus	40.14	38.31
TraesCS5A01G179000.1	Wheat	nucleus	40.14	38.31
TraesCS5D01G183500.1	Wheat	nucleus	40.14	38.31
TraesCS5B01G176700.1	Wheat	nucleus	39.46	37.91
Zm00001d005578_P001	Maize	nucleus	40.14	34.71
EES14897	Sorghum	nucleus, plastid	40.82	34.09
Os08t0357300-01	Rice	cytosol	25.85	33.63
Zm00001d030577_P001	Maize	nucleus	36.05	33.54
Zm00001d020025_P001	Maize	endoplasmic reticulum, extracellular	21.09	25.62

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:K4BVF3	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF229
SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc04g080740.1	EnsemblPlants:Solyc04g080740.1.1	UniParc:UPI0002765A86	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:64845374..64845817

Molecular Weight (calculated)

17266.4 Da

IEP (calculated)

8.414

GRAVY (calculated)

-0.929

Length

147 amino acids

Sequence
(BLAST)

001: MATSSGNSSQ IPNNSASDEV FMVVDERKRK RMQSNRESAR RSRMRKQKHL DDLMCQVTQL KKENSNILNS ITMTTQQYGN VEAENSVLRA QMMELTQRLQ
101: SLNEILTYIN NSNNNNNYYQ EDFQMNPWNL MYVNQPIMAS SDMLYQY

Best Arabidopsis Sequence Match ( AT1G75390.1 )
(BLAST)

001: MNNKTEMGSS TSGNCSSVST TGLANSGSES DLRQRDLIDE RKRKRKQSNR ESARRSRMRK QKHLDDLTAQ VTHLRKENAQ IVAGIAVTTQ HYVTIEAEND
101: ILRAQVLELN HRLQSLNEIV DFVESSSSGF GMETGQGLFD GGLFDGVMNP MNLGFYNQPI MASASTAGDV FNC

Arabidopsis Description

BZIP44bZIP transcription factor 44 [Source:UniProtKB/Swiss-Prot;Acc:C0Z2L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.