CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96525
KRH04810
KRH05862
KRH15149
KRH16196
KRH22307
KRH25697
KRH27017
KRH31798
KRH42848
KRH51803
KRH52637
KRH55819
KRH58937
KRH61129
KRH61976
KRH65972
KRH68258
KRH69221
KRH71054
KRH75199

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34590.1	KRH71054	AT1G13600.1	16709202
AT4G34590.1	KRH75199	AT1G13600.1	16709202
AT4G34590.1	KRH42848	AT2G18160.1	16709202
AT4G34590.1	KRH58937	AT2G18160.1	16709202
AT4G34590.1	KRH22307	AT2G31070.1	21245844
AT4G34590.1	KRH25697	AT2G31070.1	21245844
AT4G34590.1	KRH27017	AT2G31070.1	21245844
AT4G34590.1	KRH55819	AT2G31070.1	21245844
AT4G34590.1	KRG96525	AT3G62420.1	16709202
AT4G34590.1	KRH31798	AT3G62420.1	16709202
AT4G34590.1	KRH65972	AT3G62420.1	16709202
AT4G34590.1	KRH68258	AT3G62420.1	16709202
AT4G34590.1	KRH69221	AT3G62420.1	16709202
AT4G34590.1	KRG96525	AT3G62420.1	16810321
AT4G34590.1	KRH31798	AT3G62420.1	16810321
AT4G34590.1	KRH65972	AT3G62420.1	16810321
AT4G34590.1	KRH68258	AT3G62420.1	16810321
AT4G34590.1	KRH69221	AT3G62420.1	16810321
AT4G34590.1	KRH05862	AT4G34590.1	16709202
AT4G34590.1	KRH15149	AT4G34590.1	16709202
AT4G34590.1	KRH51803	AT4G34590.1	16709202
AT4G34590.1	KRH61129	AT4G34590.1	16709202
AT4G34590.1	KRH04810	AT5G24800.1	16709202
AT4G34590.1	KRH16196	AT5G24800.1	16709202
AT4G34590.1	KRH52637	AT5G24800.1	16709202
AT4G34590.1	KRH61976	AT5G24800.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61129	Soybean	nucleus, plastid	86.27	86.27
PGSC0003DMT400009493	Potato	nucleus	50.33	51.33
Solyc04g080740.1.1	Tomato	nucleus	49.02	51.02
KRH24436	Soybean	nucleus	52.94	50.62
KRH15149	Soybean	nucleus	54.25	50.0
CDX75445	Canola	nucleus	49.67	49.35
CDX69072	Canola	nucleus	49.02	48.7
Bra017664.1-P	Field mustard	nucleus	48.37	48.37
CDX72490	Canola	nucleus	48.37	48.37
CDY45319	Canola	nucleus	48.37	48.37
KRH29414	Soybean	nucleus	52.29	48.19
KRH60802	Soybean	nucleus	47.71	47.1
CDX76292	Canola	nucleus	43.14	46.48
Bra034639.1-P	Field mustard	nucleus	43.14	46.48
KRH51497	Soybean	nucleus, plastid	41.83	46.38
CDY31528	Canola	nucleus	42.48	45.77
CDY17470	Canola	nucleus	42.48	45.77
AT4G34590.1	Thale cress	nucleus	47.06	45.28
KRH05862	Soybean	nucleus	54.9	43.75
Bra011545.1-P	Field mustard	nucleus	50.33	43.02
KRH58937	Soybean	nucleus, plastid	45.75	42.94
EER96530	Sorghum	nucleus	40.52	38.99
KRG96525	Soybean	nucleus	37.91	38.67
Os09t0306400-01	Rice	nucleus	38.56	38.56
KRH68258	Soybean	nucleus	37.25	38.0
KRH65972	Soybean	nucleus	28.76	36.07
KRH42848	Soybean	nucleus	48.37	35.58
KRH69221	Soybean	nucleus	33.99	34.9
HORVU5Hr1G054510.1	Barley	nucleus	33.33	33.12
TraesCS5D01G183500.1	Wheat	nucleus	33.33	33.12
TraesCS5A01G179000.1	Wheat	nucleus	33.33	33.12
TraesCS5B01G176700.1	Wheat	nucleus	32.68	32.68
EES14897	Sorghum	nucleus, plastid	37.25	32.39
Zm00001d005578_P001	Maize	nucleus	35.95	32.35
Zm00001d030577_P001	Maize	nucleus	33.33	32.28
KRH31798	Soybean	nucleus	32.03	32.24
KRH11069	Soybean	cytosol, plastid	37.25	23.27
Os08t0357300-01	Rice	cytosol	15.69	21.24
Zm00001d020025_P001	Maize	endoplasmic reticulum, extracellular	15.69	19.83

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100809015	MapMan:15.5.4.1	EMBL:ACUP02003392	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G029600
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1K7P6	InterPro:IPR004827	EnsemblPlants:KRH51803	ProteinID:KRH51803
ProteinID:KRH51803.1	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF229
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000295CD9A	InterPro:bZIP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:2313588..2314965

Molecular Weight (calculated)

17182.2 Da

IEP (calculated)

9.571

GRAVY (calculated)

-0.774

Length

153 amino acids

Sequence
(BLAST)

001: MSMASSSGNS SISTKSQSSG SEGDLQVVVD ERKKKRKQSN RESARRSRMR KRKHLDELTK QVSQLAKGNG EILGTIDITT QHYLNVEAEN SILRAQMEEL
101: SQRLQSLNDI VDGIINLTNA TTAYERDCYL TSAQNITTKN NTLCLNQQAV FQW

Best Arabidopsis Sequence Match ( AT2G18160.1 )
(BLAST)

001: MASSSSTYRS SSSSDGGNNN PSDSVVTVDE RKRKRMLSNR ESARRSRMRK QKHVDDLTAQ INQLSNDNRQ ILNSLTVTSQ LYMKIQAENS VLTAQMEELS
101: TRLQSLNEIV DLVQSNGAGF GVDQIDGCGF DDRTVGIDGY YDDMNMMSNV NHWGGSVYTN QPIMANDINM Y

Arabidopsis Description

BZIP2bZIP transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.