CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24436	Soybean	nucleus	92.77	96.25
KRH60802	Soybean	nucleus	71.69	76.77
KRH51497	Soybean	nucleus, plastid	62.05	74.64
Solyc01g109880.2.1	Tomato	nucleus	65.66	66.87
VIT_18s0001g13040.t01	Wine grape	nucleus	61.45	66.23
PGSC0003DMT400079474	Potato	nucleus	65.06	65.06
PGSC0003DMT400043542	Potato	nucleus	57.23	59.75
Solyc10g054010.1.1	Tomato	nucleus	56.63	57.67
KRH58937	Soybean	nucleus, plastid	53.01	53.99
KRH15149	Soybean	nucleus	53.01	53.01
KRH61129	Soybean	nucleus, plastid	48.8	52.94
KRH51803	Soybean	nucleus, plastid	48.19	52.29
KRH05862	Soybean	nucleus	54.22	46.88
EER96530	Sorghum	nucleus	41.57	43.4
Os09t0306400-01	Rice	nucleus	39.76	43.14
KRH11069	Soybean	cytosol, plastid	62.65	42.45
KRH42848	Soybean	nucleus	53.01	42.31
KRG96525	Soybean	nucleus	37.35	41.33
KRH68258	Soybean	nucleus	36.75	40.67
TraesCS5D01G183500.1	Wheat	nucleus	37.35	40.26
HORVU5Hr1G054510.1	Barley	nucleus	37.35	40.26
KRH31798	Soybean	nucleus	36.75	40.13
EES14897	Sorghum	nucleus, plastid	42.17	39.77
KRH69221	Soybean	nucleus	35.54	39.6
TraesCS5B01G176700.1	Wheat	nucleus	36.14	39.22
TraesCS5A01G179000.1	Wheat	nucleus	36.14	38.96
Zm00001d030577_P001	Maize	nucleus	36.14	37.97
Zm00001d005578_P001	Maize	nucleus	37.35	36.47
KRH65972	Soybean	nucleus	26.51	36.07
Os08t0357300-01	Rice	cytosol	20.48	30.09
Zm00001d020025_P001	Maize	endoplasmic reticulum, extracellular	16.27	22.31

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:547956	EMBL:ACUP02006800	EMBL:AF532621	ncoils:Coil
EnsemblPlantsGene:GLYMA_11G114800	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EnsemblPlants:KRH29414	ProteinID:KRH29414
ProteinID:KRH29414.1	EMBL:KT031139	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF229	UniProt:Q8L5W2	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00000A5DDD	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:8767704..8769735

Molecular Weight (calculated)

18478.8 Da

IEP (calculated)

6.531

GRAVY (calculated)

-0.492

Length

166 amino acids

Sequence
(BLAST)

001: MACSSGTSSG SLSLLQNSGS EEDLQAMMED QRKRKRMISN RESARRSRMR KQKHLDDLVS QVAQLRKENQ QILTSVNITT QQYLSVEAEN SVLRAQVGEL
101: SHRLESLNEI VDVLNATTTV AGFGAAASST FVEPMNNNNN SFFNFNPLNM GYLNQPIMAS ADILQY

Best Arabidopsis Sequence Match ( AT1G75390.1 )
(BLAST)

001: MNNKTEMGSS TSGNCSSVST TGLANSGSES DLRQRDLIDE RKRKRKQSNR ESARRSRMRK QKHLDDLTAQ VTHLRKENAQ IVAGIAVTTQ HYVTIEAEND
101: ILRAQVLELN HRLQSLNEIV DFVESSSSGF GMETGQGLFD GGLFDGVMNP MNLGFYNQPI MASASTAGDV FNC

Arabidopsis Description

BZIP44bZIP transcription factor 44 [Source:UniProtKB/Swiss-Prot;Acc:C0Z2L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.