Factsheet for VIT_18s0001g13040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g04450.t01	Wine grape	nucleus	67.53	66.24
KRH24436	Soybean	nucleus	66.88	64.38
VIT_04s0023g02430.t01	Wine grape	nucleus	63.64	62.42
KRH29414	Soybean	nucleus	66.23	61.45
KRH60802	Soybean	nucleus	61.04	60.65
KRH51497	Soybean	nucleus, plastid	53.25	59.42
VIT_14s0060g01210.t01	Wine grape	nucleus	41.56	44.14
EER96530	Sorghum	nucleus	42.21	40.88
Os09t0306400-01	Rice	nucleus	39.61	39.87
VIT_07s0005g01450.t01	Wine grape	nucleus	36.36	38.62
HORVU5Hr1G054510.1	Barley	nucleus	35.71	35.71
Zm00001d005578_P001	Maize	nucleus	38.96	35.29
TraesCS5A01G179000.1	Wheat	nucleus	35.06	35.06
TraesCS5D01G183500.1	Wheat	nucleus	35.06	35.06
TraesCS5B01G176700.1	Wheat	nucleus	34.42	34.64
EES14897	Sorghum	nucleus, plastid	38.96	34.09
Zm00001d030577_P001	Maize	nucleus	33.77	32.91
VIT_05s0077g01140.t01	Wine grape	nucleus	31.82	31.82
KRH11069	Soybean	cytosol, plastid	46.75	29.39
Os08t0357300-01	Rice	cytosol	18.18	24.78
Zm00001d020025_P001	Maize	endoplasmic reticulum, extracellular	16.88	21.49

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100855209	wikigene:100855209	MapMan:15.5.4.1	ProteinID:CCB45976	ProteinID:CCB45976.1
ncoils:Coil	UniProt:F6H1J5	EMBL:FN595227	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
EntrezGene:LOC100855209	wikigene:LOC100855209	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF229	SMART:SM00338	SUPFAM:SSF57959	TIGR:TC56010	TIGR:TC56245	UniParc:UPI0002109535
ArrayExpress:VIT_18s0001g13040	EnsemblPlantsGene:VIT_18s0001g13040	EnsemblPlants:VIT_18s0001g13040.t01	RefSeq:XP_003634372	RefSeq:XP_003634372.1	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:11138196..11139020

Molecular Weight (calculated)

17768.1 Da

IEP (calculated)

6.807

GRAVY (calculated)

-0.724

Length

154 amino acids

Sequence
(BLAST)

001: MMASSSGNSS GSTQLQNSGS EEDLQHVMDQ RKRKRMLSNR ESARRSRMRK QKHLDDLMAQ VAQLRKENNE ILSSINITNQ RYLTVEADNS ILRAQAMELS
101: HRYQSLNDIL NYMNTSNGVF ETEDLPVTVD PFMNPMNYLY LNQPIIASVD MFPY

Best Arabidopsis Sequence Match ( AT1G75390.1 )
(BLAST)

001: MNNKTEMGSS TSGNCSSVST TGLANSGSES DLRQRDLIDE RKRKRKQSNR ESARRSRMRK QKHLDDLTAQ VTHLRKENAQ IVAGIAVTTQ HYVTIEAEND
101: ILRAQVLELN HRLQSLNEIV DFVESSSSGF GMETGQGLFD GGLFDGVMNP MNLGFYNQPI MASASTAGDV FNC

Arabidopsis Description

BZIP44bZIP transcription factor 44 [Source:UniProtKB/Swiss-Prot;Acc:C0Z2L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.