Factsheet for VIT_04s0023g02430.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g02750.t01
VIT_04s0023g02430.t01
VIT_07s0005g01450.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18160.1	VIT_04s0023g02430.t01	AT2G18160.1	16709202
AT2G18160.1	VIT_07s0005g01450.t01	AT3G62420.1	16709202
AT2G18160.1	VIT_07s0005g01450.t01	AT3G62420.1	16810321
AT2G18160.1	VIT_04s0008g02750.t01	AT5G24800.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g13040.t01	Wine grape	nucleus	62.42	63.64
VIT_03s0038g04450.t01	Wine grape	nucleus	60.51	60.51
Solyc02g084860.1.1	Tomato	nucleus	53.5	58.33
PGSC0003DMT400009068	Potato	nucleus	53.5	58.33
Solyc03g033730.1.1	Tomato	nucleus	40.13	54.78
KRH58937	Soybean	nucleus, plastid	55.41	53.37
CDY29220	Canola	nucleus	49.04	49.68
PGSC0003DMT400058187	Potato	nucleus	52.23	49.4
Bra024478.1-P	Field mustard	nucleus	48.41	49.03
Bra037235.1-P	Field mustard	nucleus, plastid	49.68	46.43
CDY53277	Canola	nucleus, plastid	49.68	46.43
CDY30327	Canola	nucleus, plastid	49.68	46.43
PGSC0003DMT400040054	Potato	nucleus	38.85	46.21
CDY20909	Canola	nucleus	49.04	45.29
AT2G18160.1	Thale cress	nucleus	48.41	44.44
Bra039631.1-P	Field mustard	nucleus	47.13	44.05
CDY46312	Canola	nucleus	47.13	44.05
KRH42848	Soybean	nucleus	54.14	40.87
VIT_14s0060g01210.t01	Wine grape	nucleus	37.58	40.69
EER96530	Sorghum	nucleus	37.58	37.11
Os09t0306400-01	Rice	nucleus	35.03	35.95
VIT_07s0005g01450.t01	Wine grape	nucleus	33.12	35.86
TraesCS5A01G179000.1	Wheat	nucleus	33.76	34.42
TraesCS5D01G183500.1	Wheat	nucleus	33.76	34.42
HORVU5Hr1G054510.1	Barley	nucleus	33.76	34.42
TraesCS5B01G176700.1	Wheat	nucleus	33.12	33.99
EES14897	Sorghum	nucleus, plastid	36.31	32.39
VIT_05s0077g01140.t01	Wine grape	nucleus	31.21	31.82
Zm00001d005578_P001	Maize	nucleus	33.76	31.18
Zm00001d030577_P001	Maize	nucleus	31.21	31.01
Os08t0357300-01	Rice	cytosol	18.47	25.66
Zm00001d020025_P001	Maize	endoplasmic reticulum, extracellular	13.38	17.36

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100247207	wikigene:100247207	MapMan:15.5.4.1	EMBL:AM484540	ProteinID:CAN70943
ProteinID:CAN70943.1	ProteinID:CCB44416	ProteinID:CCB44416.1	ncoils:Coil	UniProt:F6GWT1	EMBL:FN594959
GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046982	InterPro:IPR004827
EntrezGene:LOC100247207	wikigene:LOC100247207	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF253	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00015CB9B4	ArrayExpress:VIT_04s0023g02430	EnsemblPlantsGene:VIT_04s0023g02430
EnsemblPlants:VIT_04s0023g02430.t01	unigene:Vvi.20651	RefSeq:XP_002276079	RefSeq:XP_002276079.1	RefSeq:XP_002276079.3	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:18983616..18984767

Molecular Weight (calculated)

18152.8 Da

IEP (calculated)

7.678

GRAVY (calculated)

-0.646

Length

157 amino acids

Sequence
(BLAST)

001: MGSSSGASSE SSQLQHSGSE EDLRQIMDQR KRKRMLSNRE SARRSRMRKQ KHLDDMMAQM VHLRKENNRI LTTMNVTTQF HMNVEAENAI LRAQMAELTL
101: RLQTLNEIMD YLNSSNVPFG TEYQGTQIAD ECFMNIPWVP PFINQPIMAS ADGMFMY

Best Arabidopsis Sequence Match ( AT1G75390.1 )
(BLAST)

001: MNNKTEMGSS TSGNCSSVST TGLANSGSES DLRQRDLIDE RKRKRKQSNR ESARRSRMRK QKHLDDLTAQ VTHLRKENAQ IVAGIAVTTQ HYVTIEAEND
101: ILRAQVLELN HRLQSLNEIV DFVESSSSGF GMETGQGLFD GGLFDGVMNP MNLGFYNQPI MASASTAGDV FNC

Arabidopsis Description

BZIP44bZIP transcription factor 44 [Source:UniProtKB/Swiss-Prot;Acc:C0Z2L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.