Factsheet for VIT_04s0008g02750.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g02750.t01
VIT_04s0023g02430.t01
VIT_06s0009g01910.t01
VIT_07s0005g01450.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24800.1	VIT_04s0023g02430.t01	AT2G18160.1	16709202
AT5G24800.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT5G24800.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT5G24800.1	VIT_07s0005g01450.t01	AT3G62420.1	16709202
AT5G24800.1	VIT_07s0005g01450.t01	AT3G62420.1	16810321
AT5G24800.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT5G24800.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592
AT5G24800.1	VIT_04s0008g02750.t01	AT5G24800.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16196	Soybean	cytosol, nucleus	20.63	47.68
KRH52637	Soybean	nucleus	36.68	44.44
AT5G24800.1	Thale cress	nucleus	34.96	44.04
CDX80469	Canola	nucleus	33.81	42.45
CDX88132	Canola	nucleus	33.81	42.45
CDY05397	Canola	nucleus	32.95	41.37
CDY05458	Canola	nucleus	32.95	41.37
Bra009793.1-P	Field mustard	nucleus	33.81	40.55
KRH61976	Soybean	nucleus	34.67	40.33
Bra020471.1-P	Field mustard	nucleus	33.24	40.14
Os02t0175100-01	Rice	mitochondrion, nucleus	30.95	38.99
Zm00001d015421_P001	Maize	nucleus	35.53	37.46
GSMUA_Achr1P23640_001	Banana	nucleus	26.93	37.45
Os02t0266800-01	Rice	nucleus	31.52	36.91
KRH04810	Soybean	nucleus	33.52	36.68
TraesCS7B01G391800.1	Wheat	nucleus	25.79	36.29
KXG29589	Sorghum	nucleus	32.95	35.94
TraesCS7A01G488600.2	Wheat	nucleus	25.79	35.86
PGSC0003DMT400038493	Potato	nucleus	35.24	35.24
TraesCS6D01G144400.2	Wheat	nucleus	30.95	34.5
TraesCS7D01G475100.1	Wheat	nucleus	24.36	34.41
TraesCS6A01G154600.2	Wheat	nucleus	30.95	34.39
TraesCS6B01G182500.5	Wheat	nucleus	30.66	34.19
Zm00001d003529_P001	Maize	cytosol	12.61	34.11
Solyc08g006110.2.1	Tomato	nucleus	33.81	33.62
Os06t0662200-01	Rice	nucleus	26.65	31.53
Zm00001d046937_P001	Maize	nucleus	25.21	31.21
EER90165	Sorghum	nucleus	24.36	29.62
Zm00001d050588_P002	Maize	nucleus	18.62	28.63
GSMUA_Achr1P15640_001	Banana	nucleus	26.07	26.38
VIT_14s0030g02200.t01	Wine grape	nucleus	27.22	22.46
HORVU6Hr1G031330.2	Barley	nucleus	16.62	20.21
VIT_07s0141g00170.t01	Wine grape	nucleus	25.5	19.69
VIT_00s1609g00010.t01	Wine grape	cytosol	6.02	14.58

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100264680	wikigene:100264680	MapMan:15.5.4.1	MapMan:15.5.4.2	ProteinID:CCB46661
ProteinID:CCB46661.1	ncoils:Coil	UniProt:F6H3C4	EMBL:FN595231	GO:GO:0003674	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019725	GO:GO:0042803	GO:GO:0046982	GO:GO:0071333	InterPro:IPR004827	EntrezGene:LOC100264680
wikigene:LOC100264680	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF113
SMART:SM00338	SUPFAM:SSF57959	TIGR:TC52020	TIGR:TC57064	UniParc:UPI000210A35B	ArrayExpress:VIT_04s0008g02750
EnsemblPlantsGene:VIT_04s0008g02750	EnsemblPlants:VIT_04s0008g02750.t01	unigene:Vvi.16761	unigene:Vvi.6616	RefSeq:XP_002283059	RefSeq:XP_002283059.1
RefSeq:XP_002283059.2	InterPro:bZIP	:	:	:	:

Description

No Description!

Coordinates

chr4:-:2284121..2287115

Molecular Weight (calculated)

37994.2 Da

IEP (calculated)

5.449

GRAVY (calculated)

-0.592

Length

349 amino acids

Sequence
(BLAST)

001: MDHKPLRHDV VSHQSTTDSM KRSNSELDFQ EFVRLPISPV AVDNGAPTSK PEIRSPKART FPEPVVLFGV DEDKTFEDVC AGDFSFALKY GDAMTGFSGC
101: GGLTDLPWYQ NPTPRNSSVT ATIDSQSSIC VGTPTSCNKA LGTENQARGA TSGSSRELSD DEDIDTESGP CEESTDPNNL KRMRRMVSNR ESARRSRKRK
201: QAHLADLELQ VEQLRGENAS LYKQLTDASQ QFGDANTNNR VLKSDVEALR AKVELVEGMV ARGSVTSSLN HILQTHLSSP QLLSTHNLCR VANVSPTITV
301: RGDDASYSGM TISGHNSAAL GLENAEIRNS EIKNRVMSDG VSCASEIWP

Best Arabidopsis Sequence Match ( AT5G24800.1 )
(BLAST)

001: MDNHTAKDIG MKRSASELAL QEYLTTSPLD PCFDLMNRDY TCELRDSLLW SEGLFPAGPF RDAQSSICEN LSADSPVSAN KPEVRGGVRR TTSGSSHVNS
101: DDEDAETEAG QSEMTNDPND LKRIRRMNSN RESAKRSRRR KQEYLVDLET QVDSLKGDNS TLYKQLIDAT QQFRSAGTNN RVLKSDVETL RVKVKLAEDL
201: VARGSLTSSL NQLLQTHLSP PSHSISSLHY TGNTSPAITV HSDQSLFPGM TLSGQNSSPG LGNVSSEAVS CVSDIWP

Arabidopsis Description

BZIP9Basic leucine zipper 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.