Factsheet for VIT_14s0030g02200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92673	Soybean	nucleus	53.66	56.33
PGSC0003DMT400050096	Potato	nucleus	57.92	54.32
KRH34085	Soybean	nucleus	53.19	53.96
Solyc01g097330.2.1	Tomato	nucleus	55.32	51.54
Bra020620.1-P	Field mustard	nucleus	37.35	50.16
KRG96973	Soybean	nucleus	43.74	50.14
AT5G28770.2	Thale cress	nucleus	36.88	49.68
CDY05606	Canola	nucleus	37.35	49.53
CDY33887	Canola	nucleus	36.88	49.52
KRH68733	Soybean	nucleus	48.23	49.28
Bra010010.1-P	Field mustard	nucleus	35.7	48.09
CDX86210	Canola	nucleus	34.99	47.13
CDY48665	Canola	nucleus	35.22	46.86
VIT_07s0141g00170.t01	Wine grape	nucleus	41.37	38.72
VIT_04s0008g02750.t01	Wine grape	nucleus	22.46	27.22
VIT_00s1609g00010.t01	Wine grape	cytosol	4.73	13.89

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100255566	wikigene:100255566	MapMan:15.5.4.1	MapMan:15.5.4.2	EMBL:AM466183
InterPro:Basic_leucine-zipper_C	ProteinID:CAN74806	ProteinID:CAN74806.1	ProteinID:CCB58072	ProteinID:CCB58072.1	ncoils:Coil
UniProt:F6HTR1	EMBL:FN596249	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009987	GO:GO:0019725
GO:GO:0042802	GO:GO:0046982	GO:GO:0071215	GO:GO:0071333	InterPro:IPR004827	EntrezGene:LOC100255566
wikigene:LOC100255566	PFAM:PF00170	PFAM:PF12498	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF348	SMART:SM00338	SUPFAM:SSF57959	TIGR:TC54438	UniParc:UPI0001984A7C	ArrayExpress:VIT_14s0030g02200
EnsemblPlantsGene:VIT_14s0030g02200	EnsemblPlants:VIT_14s0030g02200.t01	unigene:Vvi.2947	RefSeq:XP_002279520	RefSeq:XP_002279520.1	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:7402807..7408597

Molecular Weight (calculated)

45388.8 Da

IEP (calculated)

5.543

GRAVY (calculated)

-0.679

Length

423 amino acids

Sequence
(BLAST)

001: MDRVFSVDEI PEQFWASPPS SSKEPSQMNR SASEWAFQRF LQESSSPPSS SSVSASGPSA ENDVVELKVP IDDPKPTPAP PAPPAPATSL DPPPNVPIDS
101: EEYQAFLKSR LNLACAAVAL SRASFVKPQD SAALADTGSQ ASKTSQLRSQ APCKGSGYDL SGAPDKEAGG PLGIPSLPAM QKKAGAQLRP TTSESSREHS
201: DDDEVEGETE TIENMDPADA KRVRRMLSNR ESARRSRRRK QAHLTELETQ VAQLRLENSS LLKRLTDISQ KYNEAAVDNR VLKADVETLR AKVKMAEETV
301: KRVTGLNPLF QTMSEISMAG MHSFDGSPSD TSADAAVPVQ DEPKQHFYPS PSDNLISTHD PRINNGLADV SSVESVLQNP AAAGAAGNKM GRTASLQRVA
401: SLEHLQKRIR GAVNGPQGSG NQQ

Best Arabidopsis Sequence Match ( AT5G28770.2 )
(BLAST)

001: MEKVFSDEEI SGNHHWSVNG MTSLNRSASE WAFNRFIQES SAAADDGEST TACGVSVSSP PNVPVDSEEY RAFLKSKLNL ACAAVAMKRG TFIKPQDTSG
101: RSDNGGANES EQASLASSKA TPMMSSAITS GSELSGDEEE ADGETNMNPT NVKRVKRMLS NRESARRSRR RKQAHLSELE TQVSQLRVEN SKLMKGLTDV
201: TQTFNDASVE NRVLKANIET LRAKVKMAEE TVKRLTGFNP MFHNMPQIVS TVSLPSETSN SPDTTSSQVT TPEIISSGNK GKALIGCKMN RTASMRRVES
301: LEHLQKRIRS VGDQ

Arabidopsis Description

BZIP63Basic leucine zipper 63 [Source:UniProtKB/Swiss-Prot;Acc:B9DGI8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.