CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96973	Soybean	nucleus	56.52	63.41
KRG92673	Soybean	nucleus	47.83	49.13
KRG89569	Soybean	nucleus	25.36	48.84
AT5G28770.2	Thale cress	nucleus	36.72	48.41
VIT_14s0030g02200.t01	Wine grape	nucleus	49.28	48.23
CDY05606	Canola	nucleus	36.23	47.02
CDX86210	Canola	nucleus	35.51	46.82
Bra010010.1-P	Field mustard	nucleus	35.51	46.82
KRH34085	Soybean	nucleus	47.1	46.76
Bra020620.1-P	Field mustard	nucleus	35.27	46.35
CDY48665	Canola	nucleus	35.51	46.23
CDY33887	Canola	nucleus	35.02	46.03
PGSC0003DMT400050096	Potato	nucleus	44.69	41.02
Solyc01g097330.2.1	Tomato	nucleus	43.48	39.65
KRH16196	Soybean	cytosol, nucleus	10.39	28.48
KRH52637	Soybean	nucleus	18.36	26.39
KRH61976	Soybean	nucleus	17.15	23.67
KRH04810	Soybean	nucleus	18.12	23.51

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.2	EMBL:ACUP02002123	InterPro:Basic_leucine-zipper_C	ncoils:Coil
EnsemblPlantsGene:GLYMA_03G247100	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1JRM9	InterPro:IPR004827	EnsemblPlants:KRH68733
ProteinID:KRH68733	ProteinID:KRH68733.1	PFAM:PF00170	PFAM:PF12498	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF348	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00023C132B	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:44393246..44397682

Molecular Weight (calculated)

45053.7 Da

IEP (calculated)

7.504

GRAVY (calculated)

-0.633

Length

414 amino acids

Sequence
(BLAST)

001: MNEIQILIVA ITIHKRLDFG MERVLSVDEI SEQYWVAASS SSSSSSSSFK SKMNRSESEW AFQQFLQQEA ASSSSNSDHD DDHHHAKLKK ESNTNIPVTL
101: HVDSQDYHAI LKTKLNLACA AVAMTRGSLV KSQNPDSGPQ ASNFSEVGSH ATLKGSGPFG NDDPSKLQNK DIKAQIGIPS SPSMQNKSAV VAMRPTISGS
201: SGEQSDDEEA EGEINMTGNM TPVDAKRVRR MLSNRESARR SRRRKQAHLT ELETQVSQLR SENSSLLKRF TDVSQKYSNA AVDNRVLKAD VETLRAKVKM
301: AEETVKRITG LSPMLHAMTE MSSLGMPLFD ESPSETSADA AVPVQEDPNH HLCQPTSNNG LGGISSIETV QQNVAAVVGG NKMGRTTSLH RVASLEHLQK
401: RIRGGADSRG TPSN

Best Arabidopsis Sequence Match ( AT5G28770.2 )
(BLAST)

001: MEKVFSDEEI SGNHHWSVNG MTSLNRSASE WAFNRFIQES SAAADDGEST TACGVSVSSP PNVPVDSEEY RAFLKSKLNL ACAAVAMKRG TFIKPQDTSG
101: RSDNGGANES EQASLASSKA TPMMSSAITS GSELSGDEEE ADGETNMNPT NVKRVKRMLS NRESARRSRR RKQAHLSELE TQVSQLRVEN SKLMKGLTDV
201: TQTFNDASVE NRVLKANIET LRAKVKMAEE TVKRLTGFNP MFHNMPQIVS TVSLPSETSN SPDTTSSQVT TPEIISSGNK GKALIGCKMN RTASMRRVES
301: LEHLQKRIRS VGDQ

Arabidopsis Description

BZIP63Basic leucine zipper 63 [Source:UniProtKB/Swiss-Prot;Acc:B9DGI8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.