CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34085	Soybean	nucleus	65.58	58.03
KRH68733	Soybean	nucleus	63.41	56.52
KRG92673	Soybean	nucleus	61.52	56.33
KRG89569	Soybean	nucleus	29.27	50.23
CDX86210	Canola	nucleus	40.38	47.45
CDY05606	Canola	nucleus	40.92	47.34
Bra020620.1-P	Field mustard	nucleus	40.38	47.3
CDY33887	Canola	nucleus	40.38	47.3
Bra010010.1-P	Field mustard	nucleus	40.11	47.13
AT5G28770.2	Thale cress	nucleus	40.11	47.13
CDY48665	Canola	nucleus	39.84	46.23
PGSC0003DMT400050096	Potato	nucleus	56.1	45.9
Solyc01g097330.2.1	Tomato	nucleus	54.2	44.05
VIT_14s0030g02200.t01	Wine grape	nucleus	50.14	43.74
KRH52637	Soybean	nucleus	21.68	27.78
KRH16196	Soybean	cytosol, nucleus	10.84	26.49
KRH04810	Soybean	nucleus	21.41	24.76
KRH61976	Soybean	nucleus	19.24	23.67

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100798673	MapMan:15.5.4.1	MapMan:15.5.4.2	EMBL:ACUP02012170	InterPro:Basic_leucine-zipper_C
ncoils:Coil	EnsemblPlantsGene:GLYMA_19G244800	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1NC96	InterPro:IPR004827
EnsemblPlants:KRG96973	ProteinID:KRG96973	ProteinID:KRG96973.1	PFAM:PF00170	PFAM:PF12498	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF348	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000233EBAB
InterPro:bZIP	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:49198913..49204222

Molecular Weight (calculated)

40070.7 Da

IEP (calculated)

8.279

GRAVY (calculated)

-0.746

Length

369 amino acids

Sequence
(BLAST)

001: MNRSESEWAF QQFLQEAAAS SSSNSDHHHL KFKNEFNINI PVTTTSIQNI NVDSQDYHAI LKTKLNLACA AVAMTRGSLV KSQNPATFSD SGPQASNSSE
101: DGLQATLKGS GPSGNDPSKL QNKDVKAQIG IPSSSSMQNK PAVAMRPTIS GSSGEQSDDE EVEGEINMTE NMTPVDAKRV RRMLSNRESA RRSRRRKQAH
201: LTELETQVSQ LRSENSSLLK RFTDVSQKYN NAAVDNRVLK ADVETLRTKV KMAEETVKRI TGLNPMLHAI TEMSSMAMPS FDESPSETSA DAAVSVQEDP
301: NHHRCQPTSN NGLGGISSIE TVQQNVAAVV GGNKTGRTTS LHRVASLEHL QKRIRGGADS RGPPSNGEQ

Best Arabidopsis Sequence Match ( AT5G28770.2 )
(BLAST)

001: MEKVFSDEEI SGNHHWSVNG MTSLNRSASE WAFNRFIQES SAAADDGEST TACGVSVSSP PNVPVDSEEY RAFLKSKLNL ACAAVAMKRG TFIKPQDTSG
101: RSDNGGANES EQASLASSKA TPMMSSAITS GSELSGDEEE ADGETNMNPT NVKRVKRMLS NRESARRSRR RKQAHLSELE TQVSQLRVEN SKLMKGLTDV
201: TQTFNDASVE NRVLKANIET LRAKVKMAEE TVKRLTGFNP MFHNMPQIVS TVSLPSETSN SPDTTSSQVT TPEIISSGNK GKALIGCKMN RTASMRRVES
301: LEHLQKRIRS VGDQ

Arabidopsis Description

BZIP63Basic leucine zipper 63 [Source:UniProtKB/Swiss-Prot;Acc:B9DGI8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.