CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92673	Soybean	nucleus	85.37	88.34
KRG96973	Soybean	nucleus	58.03	65.58
VIT_14s0030g02200.t01	Wine grape	nucleus	53.96	53.19
AT5G28770.2	Thale cress	nucleus	39.09	51.91
PGSC0003DMT400050096	Potato	nucleus	55.88	51.66
Solyc01g097330.2.1	Tomato	nucleus	55.64	51.1
Bra020620.1-P	Field mustard	nucleus	38.13	50.48
CDY33887	Canola	nucleus	37.89	50.16
CDX86210	Canola	nucleus	37.65	50.0
CDY05606	Canola	nucleus	38.13	49.84
Bra010010.1-P	Field mustard	nucleus	37.41	49.68
CDY48665	Canola	nucleus	36.93	48.43
KRH68733	Soybean	nucleus	46.76	47.1
KRG89569	Soybean	nucleus	22.78	44.19
KRH16196	Soybean	cytosol, nucleus	10.07	27.81
KRH52637	Soybean	nucleus	18.7	27.08
KRH04810	Soybean	nucleus	20.38	26.65
KRH61976	Soybean	nucleus	17.27	24.0

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100170702	MapMan:15.5.4.1	MapMan:15.5.4.2	EMBL:AB246665	EMBL:ACUP02006577
UniProt:B2DBE7	InterPro:Basic_leucine-zipper_C	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G162100	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	EnsemblPlants:KRH34085	ProteinID:KRH34085	ProteinID:KRH34085.1	PFAM:PF00170	PFAM:PF12498
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF348	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI000172CEA0	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:39640647..39643833

Molecular Weight (calculated)

44608.8 Da

IEP (calculated)

6.063

GRAVY (calculated)

-0.666

Length

417 amino acids

Sequence
(BLAST)

001: MDRVFSVDDI SDHFWPPPPI PVSGANTSSQ MSRSASEWAF QRFIQEASAS APSPPSSSSP ADVVFVEIDD QPKPTPPPPS HGGVLPSDPG PVALDSEEYQ
101: AFLKSKLNLA CAAVAMTRGS LAKSQDPSPF SDGGSQPTNP SLVGSQTTSK GSIPSGNDQS KLQDKDINAP VGIPSIPAIQ KKPAVAIRPS TSGSSREQSD
201: DEDIEGETSM NDNTDPADVK RVRRMLSNRE SARRSRRRKQ AHLTDLETQV SQLRGENSTL LKRLTDVSQK YSDSAVDNRV LKADVETLRA KVKMAEETVK
301: RITGLNPMPH AMSDISSLGL PSFDGRSPSD TSADASVPVQ DDPHHHFYQP TLNNPIPSHD PIVNNGLGGI SSIENVQQQN AAAVVGGNKI GQTASLQRVA
401: SLEHLQKRIR GGPPSEQ

Best Arabidopsis Sequence Match ( AT5G28770.2 )
(BLAST)

001: MEKVFSDEEI SGNHHWSVNG MTSLNRSASE WAFNRFIQES SAAADDGEST TACGVSVSSP PNVPVDSEEY RAFLKSKLNL ACAAVAMKRG TFIKPQDTSG
101: RSDNGGANES EQASLASSKA TPMMSSAITS GSELSGDEEE ADGETNMNPT NVKRVKRMLS NRESARRSRR RKQAHLSELE TQVSQLRVEN SKLMKGLTDV
201: TQTFNDASVE NRVLKANIET LRAKVKMAEE TVKRLTGFNP MFHNMPQIVS TVSLPSETSN SPDTTSSQVT TPEIISSGNK GKALIGCKMN RTASMRRVES
301: LEHLQKRIRS VGDQ

Arabidopsis Description

BZIP63Basic leucine zipper 63 [Source:UniProtKB/Swiss-Prot;Acc:B9DGI8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.