CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34085	Soybean	nucleus	88.34	85.37
KRG96973	Soybean	nucleus	56.33	61.52
VIT_14s0030g02200.t01	Wine grape	nucleus	56.33	53.66
AT5G28770.2	Thale cress	nucleus	38.71	49.68
KRH68733	Soybean	nucleus	49.13	47.83
PGSC0003DMT400050096	Potato	nucleus	53.1	47.45
Bra020620.1-P	Field mustard	nucleus	36.72	46.98
CDX86210	Canola	nucleus	36.48	46.82
Solyc01g097330.2.1	Tomato	nucleus	52.61	46.7
CDY33887	Canola	nucleus	36.48	46.67
Bra010010.1-P	Field mustard	nucleus	36.23	46.5
CDY05606	Canola	nucleus	36.72	46.4
CDY48665	Canola	nucleus	35.73	45.28
KRG89569	Soybean	nucleus	22.83	42.79
KRH16196	Soybean	cytosol, nucleus	10.92	29.14
KRH52637	Soybean	nucleus	20.1	28.12
KRH04810	Soybean	nucleus	20.35	25.71
KRH61976	Soybean	nucleus	18.61	25.0

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.2	EMBL:ACUP02012766	InterPro:Basic_leucine-zipper_C	ncoils:Coil
EnsemblPlantsGene:GLYMA_20G224500	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1NIQ1	InterPro:IPR004827	EnsemblPlants:KRG92673
ProteinID:KRG92673	ProteinID:KRG92673.1	PFAM:PF00170	PFAM:PF12498	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF348	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00023DBC22	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:45912553..45915926

Molecular Weight (calculated)

43260.2 Da

IEP (calculated)

5.281

GRAVY (calculated)

-0.613

Length

403 amino acids

Sequence
(BLAST)

001: MDRVFSVDDI SDHFWQPPIP VSAAQTSSQM SRSASEWAFQ RFLQEASASA PSPPSSSSAA DVVFVEIEDQ PKPAPPPPTN GAVLPNAPGP VPLDSDEYQA
101: FLKSKLNLAC AAVAMTRGSL AKSQDPSPFS EGGSQPTNPS LVESQTTSKG SIPSENDPSK LQDKDTNVPV GIPSIPAMQK KPAVAIRPST SGSSREQSDD
201: EDIEGETSMN DNTDPADVKR VRRMLSNRES ARRSRRRKQA HLTDLETQVS QLRGENSTLL KRLTDVSQKY SDSAVDNRVL KADVETLRTK VKMAEETVKR
301: ITGLNPLLHA MSDISSLGLP SFDGRSPSDT SADAAVPVQD DPHHHFYQPT STNPIPSHDP IVNNGLGGIS SIENVQQNAA VVLGGNKMGQ TASLQRVASL
401: EHL

Best Arabidopsis Sequence Match ( AT5G28770.2 )
(BLAST)

001: MEKVFSDEEI SGNHHWSVNG MTSLNRSASE WAFNRFIQES SAAADDGEST TACGVSVSSP PNVPVDSEEY RAFLKSKLNL ACAAVAMKRG TFIKPQDTSG
101: RSDNGGANES EQASLASSKA TPMMSSAITS GSELSGDEEE ADGETNMNPT NVKRVKRMLS NRESARRSRR RKQAHLSELE TQVSQLRVEN SKLMKGLTDV
201: TQTFNDASVE NRVLKANIET LRAKVKMAEE TVKRLTGFNP MFHNMPQIVS TVSLPSETSN SPDTTSSQVT TPEIISSGNK GKALIGCKMN RTASMRRVES
301: LEHLQKRIRS VGDQ

Arabidopsis Description

BZIP63Basic leucine zipper 63 [Source:UniProtKB/Swiss-Prot;Acc:B9DGI8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.