Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G391800.1 | Wheat | nucleus | 80.97 | 80.65 |
| TraesCS7A01G488600.2 | Wheat | nucleus | 80.57 | 79.28 |
| EER90165 | Sorghum | nucleus | 50.61 | 43.55 |
| Zm00001d046937_P001 | Maize | nucleus | 49.39 | 43.26 |
| Zm00001d003529_P001 | Maize | cytosol | 21.46 | 41.09 |
| Zm00001d050588_P002 | Maize | nucleus | 35.63 | 38.77 |
| Os06t0662200-01 | Rice | nucleus | 45.75 | 38.31 |
| TraesCS6D01G144400.2 | Wheat | nucleus | 44.94 | 35.46 |
| GSMUA_Achr1P23640_001 | Banana | nucleus | 31.17 | 30.68 |
| CDX80469 | Canola | nucleus | 32.79 | 29.14 |
| AT5G24800.1 | Thale cress | nucleus | 32.39 | 28.88 |
| CDX88132 | Canola | nucleus | 32.39 | 28.78 |
| CDY05397 | Canola | nucleus | 31.98 | 28.42 |
| CDY05458 | Canola | nucleus | 31.58 | 28.06 |
| Bra009793.1-P | Field mustard | nucleus | 32.79 | 27.84 |
| KRH16196 | Soybean | cytosol, nucleus | 17.0 | 27.81 |
| Bra020471.1-P | Field mustard | nucleus | 31.98 | 27.34 |
| KRH52637 | Soybean | nucleus | 31.17 | 26.74 |
| KRH61976 | Soybean | nucleus | 30.36 | 25.0 |
| KRH04810 | Soybean | nucleus | 31.58 | 24.45 |
| VIT_04s0008g02750.t01 | Wine grape | nucleus | 34.41 | 24.36 |
| Solyc08g006110.2.1 | Tomato | nucleus | 32.79 | 23.08 |
| PGSC0003DMT400038493 | Potato | nucleus | 32.39 | 22.92 |
| GSMUA_Achr1P15640_001 | Banana | nucleus | 31.17 | 22.32 |
| TraesCS5D01G447500.1 | Wheat | nucleus | 28.74 | 17.49 |
| TraesCS5D01G068800.1 | Wheat | nucleus | 19.03 | 15.77 |
| TraesCS1D01G332200.1 | Wheat | nucleus | 18.62 | 11.41 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR004827 | PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF113 |
| SMART:SM00338 | SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS7D01G475100 | EnsemblPlants:TraesCS7D01G475100.1 | InterPro:bZIP | SEG:seg |
Description
No Description!
Coordinates
chr7D:-:587119217..587120736
Molecular Weight (calculated)
26986.6 Da
IEP (calculated)
8.353
GRAVY (calculated)
-0.731
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKCASELEF EAFIRQHLAA AEAEAQRGRP GQGPDDSRYG EHGRGDGVFS PGGGLPGLCF GDQNALELQE SNAGHVWWSD GLRAPQHHAV PTPTQSQTPA
101: VSASPRETIS GNQALETESD SDSESLVEIG GGRCKRSGKS SDTRRIRRMV SNRESARRSR RRKHAQLTDL ELQVEQLKSE SATLFKQLTE ANQQFTTAVT
201: DNRILKSDVE TLRIKVKMAE DMVARGAVSC GLGQQLGLAP FLNSRKM
101: VSASPRETIS GNQALETESD SDSESLVEIG GGRCKRSGKS SDTRRIRRMV SNRESARRSR RRKHAQLTDL ELQVEQLKSE SATLFKQLTE ANQQFTTAVT
201: DNRILKSDVE TLRIKVKMAE DMVARGAVSC GLGQQLGLAP FLNSRKM
001: MDNHTAKDIG MKRSASELAL QEYLTTSPLD PCFDLMNRDY TCELRDSLLW SEGLFPAGPF RDAQSSICEN LSADSPVSAN KPEVRGGVRR TTSGSSHVNS
101: DDEDAETEAG QSEMTNDPND LKRIRRMNSN RESAKRSRRR KQEYLVDLET QVDSLKGDNS TLYKQLIDAT QQFRSAGTNN RVLKSDVETL RVKVKLAEDL
201: VARGSLTSSL NQLLQTHLSP PSHSISSLHY TGNTSPAITV HSDQSLFPGM TLSGQNSSPG LGNVSSEAVS CVSDIWP
101: DDEDAETEAG QSEMTNDPND LKRIRRMNSN RESAKRSRRR KQEYLVDLET QVDSLKGDNS TLYKQLIDAT QQFRSAGTNN RVLKSDVETL RVKVKLAEDL
201: VARGSLTSSL NQLLQTHLSP PSHSISSLHY TGNTSPAITV HSDQSLFPGM TLSGQNSSPG LGNVSSEAVS CVSDIWP
Arabidopsis Description
BZIP9Basic leucine zipper 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUD3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.