Factsheet for PGSC0003DMT400009068

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009068
PGSC0003DMT400009493
PGSC0003DMT400018832
PGSC0003DMT400038493
PGSC0003DMT400040054
PGSC0003DMT400058187
PGSC0003DMT400088166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18160.1	PGSC0003DMT400009068	AT2G18160.1	16709202
AT2G18160.1	PGSC0003DMT400040054	AT2G18160.1	16709202
AT2G18160.1	PGSC0003DMT400058187	AT2G18160.1	16709202
AT2G18160.1	PGSC0003DMT400018832	AT3G62420.1	16709202
AT2G18160.1	PGSC0003DMT400088166	AT3G62420.1	16709202
AT2G18160.1	PGSC0003DMT400018832	AT3G62420.1	16810321
AT2G18160.1	PGSC0003DMT400088166	AT3G62420.1	16810321
AT2G18160.1	PGSC0003DMT400009493	AT4G34590.1	16709202
AT2G18160.1	PGSC0003DMT400038493	AT5G24800.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084860.1.1	Tomato	nucleus	100.0	100.0
PGSC0003DMT400058187	Potato	nucleus	68.06	59.04
PGSC0003DMT400040054	Potato	nucleus	52.78	57.58
PGSC0003DMT400009493	Potato	nucleus	59.72	57.33
VIT_04s0023g02430.t01	Wine grape	nucleus	58.33	53.5
KRH58937	Soybean	nucleus, plastid	60.42	53.37
PGSC0003DMT400079474	Potato	nucleus	61.11	53.01
PGSC0003DMT400043542	Potato	nucleus	52.08	47.17
PGSC0003DMT400088166	Potato	nucleus	46.53	46.53
Bra024478.1-P	Field mustard	nucleus	48.61	45.16
CDY29220	Canola	nucleus	48.61	45.16
PGSC0003DMT400018832	Potato	nucleus	45.14	45.14
PGSC0003DMT400007165	Potato	nucleus	41.67	43.48
PGSC0003DMT400085559	Potato	nucleus	41.67	43.48
AT2G18160.1	Thale cress	nucleus	49.31	41.52
CDY20909	Canola	nucleus	48.61	41.18
Bra037235.1-P	Field mustard	nucleus, plastid	47.92	41.07
Bra039631.1-P	Field mustard	nucleus	47.92	41.07
CDY53277	Canola	nucleus, plastid	47.92	41.07
CDY46312	Canola	nucleus	47.92	41.07
CDY30327	Canola	nucleus, plastid	47.92	41.07
KRH42848	Soybean	nucleus	59.03	40.87
EER96530	Sorghum	nucleus	43.75	39.62
Os09t0306400-01	Rice	nucleus	41.67	39.22
HORVU5Hr1G054510.1	Barley	nucleus	38.19	35.71
TraesCS5B01G176700.1	Wheat	nucleus	37.5	35.29
Zm00001d005578_P001	Maize	nucleus	41.67	35.29
TraesCS5A01G179000.1	Wheat	nucleus	37.5	35.06
TraesCS5D01G183500.1	Wheat	nucleus	37.5	35.06
Zm00001d030577_P001	Maize	nucleus	35.42	32.28
EES14897	Sorghum	nucleus, plastid	38.19	31.25
Os08t0357300-01	Rice	cytosol	24.31	30.97
Zm00001d020025_P001	Maize	endoplasmic reticulum, extracellular	20.14	23.97

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102593731	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:M0ZVK3	PFAM:PF00170	EnsemblPlantsGene:PGSC0003DMG400003529	PGSC:PGSC0003DMG400003529	EnsemblPlants:PGSC0003DMT400009068
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF229	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0002768E40	RefSeq:XP_006340665.1	InterPro:bZIP	SEG:seg	:	:

Description

Ocs element-binding factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003529]

Coordinates

chr2:-:40100343..40101375

Molecular Weight (calculated)

16433.4 Da

IEP (calculated)

5.209

GRAVY (calculated)

-0.654

Length

144 amino acids

Sequence
(BLAST)

001: MASPSGNSSS GSEDLQQLMD QRKRKRMISN RESARRSRMK KQTHLNELMA QVNQLKEQNN QIVSNINMVS QVYLNVEAEN SVLRAQMAEL SNRLQSLNEI
101: INCINSANST IDETEINCED DFLNPWNLLH VNQPIMASAD AFMY

Best Arabidopsis Sequence Match ( AT4G34590.1 )
(BLAST)

001: MESSSSGTTS STIQTSSGSE ESLMEQRKRK RMLSNRESAR RSRMKKQKLL DDLTAQVNHL KKENTEIVTS VSITTQHYLT VEAENSVLRA QLDELNHRLQ
101: SLNDIIEFLD SSNNNNNNNM GMCSNPLVGL ECDDFFVNQM NMSYIMNQPL MASSDALMY

Arabidopsis Description

BZIP11bZIP transcription factor 11 [Source:UniProtKB/Swiss-Prot;Acc:O65683]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.