Factsheet for Bra024478.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003500.1-P
Bra003755.1-P
Bra007679.1-P
Bra008192.1-P
Bra009793.1-P
Bra010035.1-P
Bra011545.1-P
Bra015847.1-P
Bra017664.1-P
Bra020471.1-P
Bra024478.1-P
Bra034639.1-P
Bra037235.1-P
Bra039631.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18160.1	Bra003755.1-P	AT1G75390.1	16709202
AT2G18160.1	Bra008192.1-P	AT1G75390.1	16709202
AT2G18160.1	Bra015847.1-P	AT1G75390.1	16709202
AT2G18160.1	Bra024478.1-P	AT2G18160.1	16709202
AT2G18160.1	Bra037235.1-P	AT2G18160.1	16709202
AT2G18160.1	Bra039631.1-P	AT2G18160.1	16709202
AT2G18160.1	Bra003500.1-P	AT3G62420.1	16709202
AT2G18160.1	Bra007679.1-P	AT3G62420.1	16709202
AT2G18160.1	Bra003500.1-P	AT3G62420.1	16810321
AT2G18160.1	Bra007679.1-P	AT3G62420.1	16810321
AT2G18160.1	Bra011545.1-P	AT4G34590.1	16709202
AT2G18160.1	Bra017664.1-P	AT4G34590.1	16709202
AT2G18160.1	Bra034639.1-P	AT4G34590.1	16709202
AT2G18160.1	Bra009793.1-P	AT5G24800.1	16709202
AT2G18160.1	Bra020471.1-P	AT5G24800.1	16709202
AT2G18160.1	Bra010035.1-P	AT5G49450.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29220	Canola	nucleus	99.35	99.35
CDY20909	Canola	nucleus	98.71	90.0
Bra037235.1-P	Field mustard	nucleus, plastid	90.97	83.93
Bra039631.1-P	Field mustard	nucleus	90.32	83.33
AT2G18160.1	Thale cress	nucleus	89.03	80.7
Solyc02g084860.1.1	Tomato	nucleus	45.16	48.61
PGSC0003DMT400009068	Potato	nucleus	45.16	48.61
VIT_04s0023g02430.t01	Wine grape	nucleus	49.03	48.41
Solyc03g033730.1.1	Tomato	nucleus	35.48	47.83
Bra034639.1-P	Field mustard	nucleus	43.23	47.18
Bra017664.1-P	Field mustard	nucleus	45.81	46.41
PGSC0003DMT400040054	Potato	nucleus	38.06	44.7
KRH58937	Soybean	nucleus, plastid	45.16	42.94
Bra008192.1-P	Field mustard	nucleus	45.16	42.42
Bra007679.1-P	Field mustard	nucleus	37.42	41.13
Bra003500.1-P	Field mustard	nucleus	35.48	41.04
PGSC0003DMT400058187	Potato	nucleus	43.87	40.96
Bra011545.1-P	Field mustard	nucleus	46.45	40.22
Bra003755.1-P	Field mustard	nucleus	45.16	39.11
EER96530	Sorghum	nucleus	39.35	38.36
Os09t0306400-01	Rice	nucleus	37.42	37.91
TraesCS5D01G183500.1	Wheat	nucleus	34.19	34.42
HORVU5Hr1G054510.1	Barley	nucleus	34.19	34.42
TraesCS5A01G179000.1	Wheat	nucleus	34.19	34.42
KRH42848	Soybean	nucleus	45.81	34.13
Zm00001d005578_P001	Maize	nucleus	37.42	34.12
TraesCS5B01G176700.1	Wheat	nucleus	33.55	33.99
Zm00001d030577_P001	Maize	nucleus	31.61	31.01
EES14897	Sorghum	nucleus, plastid	33.55	29.55
Os08t0357300-01	Rice	cytosol	18.71	25.66
Zm00001d020025_P001	Maize	endoplasmic reticulum, extracellular	17.42	22.31
Bra015847.1-P	Field mustard	nucleus	40.0	17.32

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra024478	EnsemblPlants:Bra024478.1	EnsemblPlants:Bra024478.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M4E6S3	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF229	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000253EF94
InterPro:bZIP	SEG:seg	:	:	:	:

Description

AT2G18160 (E=1e-041) ATBZIP2, GBF5 | ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2); DNA binding / protein heterodimerization/ transcription factor

Coordinates

chrA06:+:16039447..16039914

Molecular Weight (calculated)

17279.2 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.632

Length

155 amino acids

Sequence
(BLAST)

001: MASSSSTYRS SSSPDGGNPN AVAVDERKRK RMLSNRESAR RSRMRKQKHI DDLTAQINQL SSDNRQILTS LTVTSQLYMK IQAENSILTA QMAELSSRLE
101: SLNEIVDLID GCGFDDRTVG INSDGFYDDM MSGVNHWGGS VYSNQPIMAN DINMY

Best Arabidopsis Sequence Match ( AT2G18160.1 )
(BLAST)

001: MASSSSTYRS SSSSDGGNNN PSDSVVTVDE RKRKRMLSNR ESARRSRMRK QKHVDDLTAQ INQLSNDNRQ ILNSLTVTSQ LYMKIQAENS VLTAQMEELS
101: TRLQSLNEIV DLVQSNGAGF GVDQIDGCGF DDRTVGIDGY YDDMNMMSNV NHWGGSVYTN QPIMANDINM Y

Arabidopsis Description

BZIP2bZIP transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.