Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G31070.1 | KRG88736 | AT2G22840.1 | 21245844 |
| AT2G31070.1 | KRG88739 | AT2G22840.1 | 21245844 |
| AT2G31070.1 | KRH05542 | AT2G22840.1 | 21245844 |
| AT2G31070.1 | KRH05543 | AT2G22840.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH22307 | Soybean | nucleus | 93.88 | 93.6 |
| KRH25697 | Soybean | nucleus | 55.1 | 64.95 |
| KRH55819 | Soybean | nucleus | 61.22 | 63.06 |
| Solyc07g053410.2.1 | Tomato | cytosol | 32.36 | 45.49 |
| PGSC0003DMT400024329 | Potato | nucleus | 41.11 | 45.34 |
| KRH27317 | Soybean | nucleus | 45.77 | 41.64 |
| CDY10772 | Canola | nucleus | 41.98 | 41.62 |
| Bra018280.1-P | Field mustard | nucleus | 42.27 | 41.55 |
| AT2G31070.1 | Thale cress | nucleus | 43.44 | 41.27 |
| CDY10771 | Canola | nucleus | 41.69 | 41.21 |
| CDY24724 | Canola | nucleus | 41.69 | 41.09 |
| KRH26201 | Soybean | nucleus | 46.65 | 40.3 |
| KRH55125 | Soybean | nucleus | 45.77 | 40.15 |
| KRH21998 | Soybean | nucleus | 44.9 | 39.19 |
| TraesCS3B01G164500.1 | Wheat | nucleus | 44.31 | 33.78 |
| TraesCS3D01G146900.1 | Wheat | nucleus | 44.31 | 33.48 |
| TraesCS3A01G140100.1 | Wheat | nucleus | 44.31 | 33.26 |
| Zm00001d008919_P001 | Maize | nucleus, plastid | 40.82 | 32.94 |
| Zm00001d039371_P001 | Maize | mitochondrion | 44.61 | 27.08 |
| Os01t0213800-01 | Rice | mitochondrion | 44.9 | 26.6 |
| HORVU3Hr1G028240.5 | Barley | extracellular, golgi, mitochondrion | 44.31 | 25.76 |
| KXG33398 | Sorghum | nucleus | 32.94 | 25.06 |
| Zm00001d043423_P001 | Maize | nucleus | 31.49 | 24.88 |
| OQU86111 | Sorghum | plastid | 45.19 | 24.72 |
| Os01t0755500-01 | Rice | cytosol, mitochondrion | 31.78 | 24.44 |
| KRH42567 | Soybean | nucleus | 25.95 | 19.02 |
| KRH45058 | Soybean | nucleus | 19.53 | 18.87 |
| KRH58674 | Soybean | nucleus | 25.36 | 18.2 |
| KRH63215 | Soybean | nucleus, plastid | 20.41 | 18.09 |
| KRH54711 | Soybean | plastid | 20.41 | 17.95 |
| KRG93654 | Soybean | nucleus | 19.53 | 17.91 |
| KRH03150 | Soybean | nucleus, plastid | 20.12 | 17.74 |
| KRH01308 | Soybean | cytosol | 19.83 | 17.71 |
| KRH11155 | Soybean | nucleus | 26.24 | 17.61 |
| KRH56798 | Soybean | nucleus | 19.83 | 17.39 |
| KRH21093 | Soybean | nucleus | 26.82 | 17.29 |
| HORVU0Hr1G006890.2 | Barley | cytosol | 10.79 | 17.21 |
| KRH56692 | Soybean | nucleus | 17.49 | 15.96 |
| Zm00001d012725_P002 | Maize | plastid | 31.49 | 15.47 |
| KRH03810 | Soybean | nucleus | 16.62 | 15.0 |
| KRH54810 | Soybean | nucleus | 16.62 | 14.39 |
| KRH63057 | Soybean | nucleus | 15.74 | 14.03 |
| KRH01497 | Soybean | plastid | 14.29 | 13.24 |
| KRH45185 | Soybean | plastid | 13.99 | 12.97 |
| KRG93829 | Soybean | nucleus, plastid | 14.58 | 12.02 |
| KRH18263 | Soybean | plastid | 14.58 | 11.93 |
| KRG91334 | Soybean | nucleus | 12.83 | 11.73 |
| KRH35497 | Soybean | nucleus | 12.54 | 11.32 |
Protein Annotations
| EntrezGene:100796390 | MapMan:15.5.19 | EMBL:ACUP02007760 | EnsemblPlantsGene:GLYMA_12G208800 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | UniProt:I1LUK9 | InterPro:IPR017887 | EnsemblPlants:KRH27017 | ProteinID:KRH27017 | ProteinID:KRH27017.1 |
| PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF13 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP |
| UniParc:UPI000233C73A | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:-:36808660..36812062
Molecular Weight (calculated)
37161.7 Da
IEP (calculated)
6.708
GRAVY (calculated)
-0.670
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMKSTGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI EFYDVQDRLG YDRPSKAVDW LIKKAKNAID KLGELPPWHP TPNTAADAEN
101: NNNNNNAGSS DMAIAAEQSE SSGYNFQLQR QLGEDHDNHH SAFIPSPIDT DAIAFFPTTT ATSSINFQTY PPNIISRTNN STEDLGLSLH SFQDPGLIHG
201: QTQAGANQTQ TPSNDQSLFS GSTQVGFEAN YPRIVTWNSD ASIDMNRTGF MVNSPALLGQ GGSAAFSQRG TLQSSFSPSL RPWSEIPMAS SEHHKSQPIQ
301: QASIFGSRFL SDALPGFCIP ARIQGEDGVG PDKPSSSSPN SHH
101: NNNNNNAGSS DMAIAAEQSE SSGYNFQLQR QLGEDHDNHH SAFIPSPIDT DAIAFFPTTT ATSSINFQTY PPNIISRTNN STEDLGLSLH SFQDPGLIHG
201: QTQAGANQTQ TPSNDQSLFS GSTQVGFEAN YPRIVTWNSD ASIDMNRTGF MVNSPALLGQ GGSAAFSQRG TLQSSFSPSL RPWSEIPMAS SEHHKSQPIQ
301: QASIFGSRFL SDALPGFCIP ARIQGEDGVG PDKPSSSSPN SHH
001: MAPDNDHFLD SPSPPLLEMR HHQSATENGG GCGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS APTAIQFYDV QDRLGFDRPS KAVDWLITKA
101: KSAIDDLAQL PPWNPADTLR QHAAAAANAK PRKTKTLISP PPPQPEETEH HRIGEEEDNE SSFLPASMDS DSIADTIKSF FPVASTQQSY HHQPPSRGNT
201: QNQDLLRLSL QSFQNGPPFP NQTEPALFSG QSNNQLAFDS STASWEQSHQ SPEFGKIQRL VSWNNVGAAE SAGSTGGFVF ASPSSLHPVY SQSQLLSQRG
301: PLQSINTPMI RAWFDPHHHH HHHQQSMTTD DLHHHHPYHI PPGIHQSAIP GIAFASSGEF SGFRIPARFQ GEQEEHGGDN KPSSASSDSR H
101: KSAIDDLAQL PPWNPADTLR QHAAAAANAK PRKTKTLISP PPPQPEETEH HRIGEEEDNE SSFLPASMDS DSIADTIKSF FPVASTQQSY HHQPPSRGNT
201: QNQDLLRLSL QSFQNGPPFP NQTEPALFSG QSNNQLAFDS STASWEQSHQ SPEFGKIQRL VSWNNVGAAE SAGSTGGFVF ASPSSLHPVY SQSQLLSQRG
301: PLQSINTPMI RAWFDPHHHH HHHQQSMTTD DLHHHHPYHI PPGIHQSAIP GIAFASSGEF SGFRIPARFQ GEQEEHGGDN KPSSASSDSR H
Arabidopsis Description
TCP3TCP3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDV9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.