CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88736
KRG88739
KRH05542
KRH05543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	KRG88736	AT2G22840.1	21245844
AT2G31070.1	KRG88739	AT2G22840.1	21245844
AT2G31070.1	KRH05542	AT2G22840.1	21245844
AT2G31070.1	KRH05543	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25697	Soybean	nucleus	78.68	90.03
KRH22307	Soybean	nucleus	63.96	61.92
KRH27017	Soybean	nucleus	63.06	61.22
Solyc07g053410.2.1	Tomato	cytosol	27.93	38.11
PGSC0003DMT400024329	Potato	nucleus	34.83	37.3
CDY10772	Canola	nucleus	35.74	34.39
KRH27317	Soybean	nucleus	38.74	34.22
CDY10771	Canola	nucleus	35.44	34.01
CDY24724	Canola	nucleus	35.44	33.91
Bra018280.1-P	Field mustard	nucleus	35.44	33.81
KRH26201	Soybean	nucleus	40.24	33.75
KRH55125	Soybean	nucleus	39.34	33.5
KRH21998	Soybean	nucleus	39.34	33.33
AT2G31070.1	Thale cress	nucleus	36.04	33.24
TraesCS3B01G164500.1	Wheat	nucleus	37.84	28.0
TraesCS3D01G146900.1	Wheat	nucleus	37.84	27.75
TraesCS3A01G140100.1	Wheat	nucleus	37.54	27.35
Zm00001d008919_P001	Maize	nucleus, plastid	34.53	27.06
Zm00001d039371_P001	Maize	mitochondrion	38.74	22.83
Os01t0213800-01	Rice	mitochondrion	38.14	21.93
KXG33398	Sorghum	nucleus	29.13	21.51
Zm00001d043423_P001	Maize	nucleus	27.93	21.43
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	37.84	21.36
Os01t0755500-01	Rice	cytosol, mitochondrion	28.23	21.08
OQU86111	Sorghum	plastid	38.74	20.57
KRH45058	Soybean	nucleus	18.32	17.18
KRH03150	Soybean	nucleus, plastid	19.52	16.71
KRH63215	Soybean	nucleus, plastid	18.92	16.28
KRH54711	Soybean	plastid	18.92	16.15
KRH01308	Soybean	cytosol	18.62	16.15
KRH56798	Soybean	nucleus	18.92	16.11
KRG93654	Soybean	nucleus	18.02	16.04
KRH42567	Soybean	nucleus	21.92	15.6
KRH58674	Soybean	nucleus	22.22	15.48
KRH11155	Soybean	nucleus	22.52	14.68
KRH21093	Soybean	nucleus	22.22	13.91
KRH56692	Soybean	nucleus	15.32	13.56
KRH03810	Soybean	nucleus	15.32	13.42
Zm00001d012725_P002	Maize	plastid	27.33	13.04
KRH63057	Soybean	nucleus	13.21	11.43
KRH54810	Soybean	nucleus	13.51	11.36
HORVU0Hr1G006890.2	Barley	cytosol	7.21	11.16
KRH01497	Soybean	plastid	11.71	10.54
KRH45185	Soybean	plastid	11.71	10.54
KRH35497	Soybean	nucleus	11.41	10.0
KRG91334	Soybean	nucleus	11.11	9.87
KRG93829	Soybean	nucleus, plastid	12.01	9.62
KRH18263	Soybean	plastid	12.01	9.55

Protein Annotations

EntrezGene:100782826	MapMan:15.5.19	EMBL:ACUP02004062	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G284500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:K7KXX9	ProteinID:KRH55818.1	EnsemblPlants:KRH55819
ProteinID:KRH55819	ProteinID:KRH55819.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF13
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00029680E7	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:47293812..47297081

Molecular Weight (calculated)

37369.6 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.969

Length

333 amino acids

Sequence
(BLAST)

001: MRTNVGDIVQ VEGGHIVRST GRKDRHSKVY TSKGPRDRRV RLSAHTAIEF YDVQDRLGYD RPSKAVDWLI KKAKTSIDKL AELPPWHPPT NHEEEEQNDA
101: AGSSGVIAIE QQQQQQQQQQ QQQQQQQQQQ QHQQQQSESC GYNFQLQRQL GAFISTHVDT DHINFQTNNN NSSEDLGLSL HCFQDHPGLI QWQSQQEGAN
201: QTPPSNEHQI QQTPFAGSTP VGFENHYQRS VTWNNEATTT DHVNRLGFLF NSQPYASAYA QSGGTLQSSF SFPMTSSSEL HRPQPVNQPS SIFGSRFVSD
301: GLAGFCIPDR IQGVEENHGV ASNRPSSSPS SIH

Best Arabidopsis Sequence Match ( AT1G53230.1 )
(BLAST)

001: MAPDNDHFLD SPSPPLLEMR HHQSATENGG GCGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS APTAIQFYDV QDRLGFDRPS KAVDWLITKA
101: KSAIDDLAQL PPWNPADTLR QHAAAAANAK PRKTKTLISP PPPQPEETEH HRIGEEEDNE SSFLPASMDS DSIADTIKSF FPVASTQQSY HHQPPSRGNT
201: QNQDLLRLSL QSFQNGPPFP NQTEPALFSG QSNNQLAFDS STASWEQSHQ SPEFGKIQRL VSWNNVGAAE SAGSTGGFVF ASPSSLHPVY SQSQLLSQRG
301: PLQSINTPMI RAWFDPHHHH HHHQQSMTTD DLHHHHPYHI PPGIHQSAIP GIAFASSGEF SGFRIPARFQ GEQEEHGGDN KPSSASSDSR H

Arabidopsis Description

TCP3TCP3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.