Factsheet for Zm00001d043423_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002049_P001
Zm00001d006338_P002
Zm00001d007465_P001
Zm00001d013346_P001
Zm00001d013555_P001
Zm00001d033396_P003
Zm00001d033876_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	Zm00001d002049_P001	AT2G22840.1	21245844
AT2G31070.1	Zm00001d006338_P002	AT2G22840.1	21245844
AT2G31070.1	Zm00001d007465_P001	AT2G22840.1	21245844
AT2G31070.1	Zm00001d013346_P001	AT2G22840.1	21245844
AT2G31070.1	Zm00001d013555_P001	AT2G22840.1	21245844
AT2G31070.1	Zm00001d033396_P003	AT2G22840.1	21245844
AT2G31070.1	Zm00001d033876_P004	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33398	Sorghum	nucleus	85.71	82.48
Os01t0755500-01	Rice	cytosol, mitochondrion	70.05	68.16
Zm00001d012725_P002	Maize	plastid	81.8	50.86
HORVU0Hr1G006890.2	Barley	cytosol	24.88	50.23
GSMUA_Achr3P31370_001	Banana	nucleus	21.89	36.4
VIT_19s0014g01680.t01	Wine grape	nucleus	32.26	35.18
Solyc07g062680.1.1	Tomato	nucleus	32.03	34.75
Solyc05g012840.1.1	Tomato	nucleus	17.74	34.53
PGSC0003DMT400032269	Potato	nucleus	31.57	34.25
KRH26201	Soybean	nucleus	31.11	34.01
KRH55125	Soybean	nucleus	30.41	33.76
KRH27317	Soybean	nucleus	29.03	33.42
AT3G15030.1	Thale cress	nucleus	31.34	32.38
KRH22307	Soybean	nucleus	25.58	32.27
KRH21998	Soybean	nucleus	28.8	31.81
AT1G53230.1	Thale cress	nucleus	28.57	31.71
Bra030952.1-P	Field mustard	nucleus	25.12	31.59
Solyc10g018710.1.1	Tomato	nucleus	12.44	31.58
GSMUA_Achr7P13980_001	Banana	nucleus	26.73	31.52
KRH27017	Soybean	nucleus	24.88	31.49
Solyc12g014140.1.1	Tomato	nucleus	28.57	31.47
Bra021586.1-P	Field mustard	nucleus	25.12	31.14
VIT_12s0028g02520.t01	Wine grape	nucleus	21.89	30.94
Solyc07g053410.2.1	Tomato	cytosol	17.28	30.74
Bra001579.1-P	Field mustard	nucleus	28.8	30.71
KRH25697	Soybean	nucleus	20.28	30.24
PGSC0003DMT400039786	Potato	nucleus	29.26	30.17
Zm00001d008919_P001	Maize	nucleus, plastid	29.49	30.12
Bra027284.1-P	Field mustard	nucleus	28.11	30.05
PGSC0003DMT400024329	Potato	nucleus	21.43	29.9
Solyc11g045640.1.1	Tomato	nucleus	14.52	28.77
KRH55819	Soybean	nucleus	21.43	27.93
PGSC0003DMT400059117	Potato	nucleus	21.43	27.84
Bra018280.1-P	Field mustard	nucleus	21.66	26.93
Solyc05g032780.1.1	Tomato	nucleus	13.13	26.89
AT2G31070.1	Thale cress	nucleus	21.66	26.04
Solyc02g077250.2.1	Tomato	nucleus	21.2	25.99
Zm00001d039371_P001	Maize	mitochondrion	32.95	25.31
VIT_10s0003g00870.t01	Wine grape	nucleus	20.97	23.82
CDX97627	Canola	mitochondrion	14.52	22.99
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	19.12	21.78
Zm00001d022256_P001	Maize	nucleus	15.9	21.36
Zm00001d038683_P001	Maize	cytosol	14.29	20.81
Zm00001d010730_P001	Maize	cytosol, plastid	13.13	20.73
Zm00001d034353_P001	Maize	cytosol	18.2	20.47
Zm00001d043368_P001	Maize	cytosol	12.9	19.79
Zm00001d020433_P001	Maize	nucleus	11.06	18.97
Zm00001d032217_P001	Maize	cytosol	10.14	18.33
PGSC0003DMT400068478	Potato	nucleus	21.2	17.66
Solyc10g008780.1.1	Tomato	nucleus	21.89	16.32
Zm00001d005737_P001	Maize	cytosol	10.37	16.3
Zm00001d018806_P001	Maize	nucleus	15.9	15.79
Zm00001d007868_P001	Maize	nucleus	15.9	15.68
Zm00001d050389_P001	Maize	nucleus	9.68	15.33
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	12.44	14.75
Zm00001d013467_P001	Maize	nucleus	11.52	13.93

Protein Annotations

MapMan:15.5.19	UniProt:A0A1D6NBL9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
ProteinID:ONM37935.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF16	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI000844C5A8	EnsemblPlantsGene:Zm00001d043423	EnsemblPlants:Zm00001d043423_P001	EnsemblPlants:Zm00001d043423_T001	SEG:seg

Description

Transcription factor TCP4

Coordinates

chr3:-:199284014..199285462

Molecular Weight (calculated)

46218.4 Da

IEP (calculated)

7.004

GRAVY (calculated)

-0.661

Length

434 amino acids

Sequence
(BLAST)

001: MASRLKLEED KNQLSKGLDP WSNPTAATST LHYLLQEKER AQAQEQLQIY HQQGFSYLQH HGRQQQQQQQ QQPPRAAGAG ADGVSSGEST PVDALATAFV
101: SGRIVRSAAG RKDRHSKVCT ARGLRDRRVR LAAHTAIRFY DVQDRLGYDR PSKAVDWLIR NAKAAIDEIP ADRVEVQQPP TEAADATEPA EQVTSTSPYR
201: FGNPGGAIGA MAGSFMPHSV GGADGGVSGS ANVKSLFPSS SAASTTPTQD EYRGSPPDLL SRTTTNHQPQ ELCLTLQSAN SHQAHQQQQQ FFGHVSPNQH
301: GMISGAAGVQ GWAAEHGQRM PSWQHASENG AGAGNGGDSY MFGVPPRQGG LDHQGGQLFS QGEPLQSSGG WPSAARTWLD PLAAIHQQPS AMAGQVGFSH
401: LVGAGGGFMG FLAPPAAAQR LQGQEEQGSE AMRE

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.