Factsheet for Zm00001d007868_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010341_P002
Zm00001d037086_P006
Zm00001d038134_P001
Zm00001d045080_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30210.1	Zm00001d037086_P006	AT4G14700.1	18818695
AT1G30210.1	Zm00001d045080_P001	AT4G14700.1	18818695
AT1G30210.1	Zm00001d010341_P002	AT5G13060.1	18818695
AT1G30210.1	Zm00001d038134_P001	AT5G13060.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018806_P001	Maize	nucleus	87.5	88.1
OQU89064	Sorghum	cytosol	14.32	78.75
Os03t0785800-01	Rice	nucleus	40.91	50.42
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	43.41	50.13
Zm00001d034353_P001	Maize	cytosol	42.95	48.96
GSMUA_Achr7P01160_001	Banana	nucleus	41.82	48.17
GSMUA_Achr2P12990_001	Banana	nucleus	40.91	47.62
GSMUA_Achr5P02530_001	Banana	nucleus	41.14	47.38
GSMUA_Achr4P22960_001	Banana	nucleus	40.68	46.86
GSMUA_Achr4P31520_001	Banana	nucleus	40.23	46.58
AT1G30210.1	Thale cress	nucleus	31.14	42.28
PGSC0003DMT400051253	Potato	nucleus	32.27	41.52
VIT_10s0003g03910.t01	Wine grape	nucleus	41.82	41.44
AT4G18390.1	Thale cress	nucleus	33.64	40.55
Solyc08g048390.1.1	Tomato	nucleus	32.95	37.47
Solyc08g048370.2.1	Tomato	cytosol	27.5	37.12
Zm00001d022256_P001	Maize	nucleus	27.05	36.84
KRH58674	Soybean	nucleus	39.77	36.61
KRH11155	Soybean	nucleus	41.59	35.81
KRH42567	Soybean	nucleus	37.95	35.68
KRH21093	Soybean	nucleus	41.82	34.59
CDX78849	Canola	nucleus, plastid	18.41	33.89
Bra013304.1-P	Field mustard	nucleus, plastid	18.41	33.89
Zm00001d010730_P001	Maize	cytosol, plastid	18.18	29.09
Zm00001d038683_P001	Maize	cytosol	19.09	28.19
Zm00001d043368_P001	Maize	cytosol	15.91	24.73
Zm00001d008919_P001	Maize	nucleus, plastid	19.55	20.24
Zm00001d032217_P001	Maize	cytosol	10.91	20.0
Zm00001d020433_P001	Maize	nucleus	10.45	18.18
Zm00001d005737_P001	Maize	cytosol	11.14	17.75
Zm00001d050389_P001	Maize	nucleus	10.68	17.15
Zm00001d039371_P001	Maize	mitochondrion	21.59	16.81
Zm00001d043423_P001	Maize	nucleus	15.68	15.9
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	12.73	15.3
Zm00001d013467_P001	Maize	nucleus	11.14	13.65
Zm00001d012725_P002	Maize	plastid	15.91	10.03

Protein Annotations

MapMan:15.5.19	UniProt:A0A1D6F9D0	InterPro:CYC/TB1_R_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR017887	InterPro:IPR017888	ProteinID:ONM27756.1	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370
PANTHER:PTHR31072	PANTHER:PTHR31072:SF2	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002211357	EnsemblPlantsGene:Zm00001d007868
EnsemblPlants:Zm00001d007868_P001	EnsemblPlants:Zm00001d007868_T001	SEG:seg	:	:	:

Description

TCP-transcription factor 43Transcription factor TCP2

Coordinates

chr2:+:241313813..241315135

Molecular Weight (calculated)

46225.9 Da

IEP (calculated)

9.951

GRAVY (calculated)

-0.479

Length

440 amino acids

Sequence
(BLAST)

001: MEVEAMGGAG GKRGRAKGAG AGAGAEPEPK RRAMAVAVQP PAAAPWAQQH PASRIYRVSR ASGGKDRHSK VYTAKGIRDR RVRLSVATAI QFYDLQDRLG
101: YDQPSKAIEW LIRAAAEAID KLPSLDAAAG FPAHPASAKD HAPPVGDDDD HHHQQQQQLT RSGCSSTSET SKGSVLSLSR SESRVKARER ARERNTVARD
201: KDPAANDTTA TTSAQAASFT ELLTGMAAAS AAPAQHKHQL RQSSVSWQPT IVSATTDYIG FAQPRKGGGH AMAHAFASPA PHLGNIASIA MAPAQHFGLA
301: SGAVTVASGG GGEPHAEMTH FSFLQDHFMP VHAAPAPAPA SAPAGEYNLD FSMSSGLMGV NTRGALQSNS QPHISGHHHQ QQQLQRLSTP LDAPNIPFLY
401: SSAAAAAAAV TTPTTADGQF AAFQLWNGFQ HADMKEKGKH

Best Arabidopsis Sequence Match ( AT4G18390.2 )
(BLAST)

001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN

Arabidopsis Description

TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.