Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010789.1-P | Field mustard | nucleus | 74.38 | 78.25 |
| CDX90234 | Canola | nucleus | 74.38 | 78.25 |
| CDY59229 | Canola | nucleus | 75.31 | 77.96 |
| Bra032365.1-P | Field mustard | nucleus | 76.23 | 77.67 |
| CDY26285 | Canola | nucleus | 76.23 | 77.67 |
| CDX99891 | Canola | nucleus | 75.31 | 76.97 |
| OQU89064 | Sorghum | cytosol | 11.73 | 47.5 |
| AT4G18390.1 | Thale cress | nucleus | 43.52 | 38.63 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 52.78 | 38.51 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 41.36 | 35.45 |
| KRH42567 | Soybean | nucleus | 49.38 | 34.19 |
| KRH58674 | Soybean | nucleus | 50.0 | 33.89 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 42.9 | 33.74 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 39.51 | 33.6 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 42.9 | 33.41 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 39.2 | 33.25 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 38.89 | 33.16 |
| KXG37409 | Sorghum | cytosol | 39.51 | 32.9 |
| KRH11155 | Soybean | nucleus | 51.85 | 32.88 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 38.58 | 32.72 |
| Os03t0785800-01 | Rice | nucleus | 35.8 | 32.49 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 42.28 | 32.31 |
| Os07t0152000-01 | Rice | nucleus | 44.14 | 32.13 |
| Zm00001d034353_P001 | Maize | cytosol | 38.27 | 32.12 |
| Zm00001d018806_P001 | Maize | nucleus | 43.21 | 32.04 |
| KRH21093 | Soybean | nucleus | 51.85 | 31.58 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 36.73 | 31.15 |
| Zm00001d007868_P001 | Maize | nucleus | 42.28 | 31.14 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 28.4 | 30.67 |
| EER95875 | Sorghum | cytosol, nucleus, peroxisome | 43.52 | 30.59 |
| HORVU5Hr1G008340.2 | Barley | nucleus | 27.78 | 30.51 |
| TraesCS5D01G040100.1 | Wheat | nucleus | 27.78 | 30.51 |
| EES16387 | Sorghum | cytosol, nucleus, plastid | 28.4 | 30.46 |
| TraesCS5A01G031900.1 | Wheat | nucleus | 27.47 | 29.97 |
| TraesCS5D01G432500.1 | Wheat | nucleus | 36.73 | 29.68 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 36.42 | 29.5 |
| TraesCS5A01G423900.1 | Wheat | cytosol | 36.73 | 29.38 |
| Zm00001d022256_P001 | Maize | nucleus | 29.01 | 29.1 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 36.11 | 28.96 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 42.28 | 25.0 |
| AT5G08070.1 | Thale cress | nucleus, plastid | 17.28 | 23.14 |
| AT3G02150.2 | Thale cress | nucleus | 21.6 | 19.72 |
| AT2G31070.1 | Thale cress | nucleus | 21.91 | 19.67 |
| Os12t0616400-01 | Rice | cytosol, nucleus, peroxisome | 12.04 | 18.75 |
| AT1G53230.1 | Thale cress | nucleus | 22.22 | 18.41 |
| AT3G15030.1 | Thale cress | nucleus | 23.77 | 18.33 |
| AT5G60970.1 | Thale cress | nucleus | 19.14 | 17.22 |
| AT1G67260.1 | Thale cress | nucleus | 16.98 | 15.32 |
| AT1G68800.2 | Thale cress | nucleus | 15.43 | 13.81 |
| AT3G18550.3 | Thale cress | nucleus | 16.05 | 11.98 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:839901 | UniProt:A0A178W971 | ProteinID:AAG50562.1 | ProteinID:AEE31192.1 | ProteinID:AEE31193.1 |
| ArrayExpress:AT1G30210 | EnsemblPlantsGene:AT1G30210 | RefSeq:AT1G30210 | TAIR:AT1G30210 | RefSeq:AT1G30210-TAIR-G | EnsemblPlants:AT1G30210.1 |
| TAIR:AT1G30210.1 | EMBL:AY035008 | EMBL:AY057672 | EMBL:AY113898 | Unigene:At.17198 | InterPro:CYC/TB1_R_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008285 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009965 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0045962 | GO:GO:0048366 |
| InterPro:IPR017887 | InterPro:IPR017888 | RefSeq:NP_564351.1 | RefSeq:NP_849730.1 | ProteinID:OAP14624.1 | PFAM:PF03634 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000056 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF2 | UniProt:Q9C758 | Symbol:TCP24 |
| InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00000A3CA6 | SEG:seg | : | : |
Description
TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
Coordinates
chr1:-:10627185..10630566
Molecular Weight (calculated)
36378.7 Da
IEP (calculated)
8.247
GRAVY (calculated)
-0.947
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.