Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62798 | Canola | nucleus | 67.74 | 71.53 |
| CDX82339 | Canola | nucleus | 69.12 | 70.75 |
| Bra001710.1-P | Field mustard | nucleus | 68.89 | 70.35 |
| CDY52898 | Canola | nucleus | 68.2 | 69.65 |
| CDY18525 | Canola | nucleus | 44.47 | 68.2 |
| Bra037579.1-P | Field mustard | nucleus | 44.7 | 68.07 |
| CDX95517 | Canola | nucleus | 44.01 | 67.49 |
| PGSC0003DMT400010380 | Potato | nucleus | 16.13 | 25.09 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 15.21 | 24.18 |
| Solyc03g119770.2.1 | Tomato | nucleus | 18.66 | 23.41 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 13.82 | 22.73 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 15.44 | 22.71 |
| KRH56692 | Soybean | nucleus | 19.59 | 22.61 |
| KRH03810 | Soybean | nucleus | 19.59 | 22.37 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 18.2 | 22.32 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 17.97 | 22.16 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 17.97 | 22.16 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 18.43 | 21.86 |
| KRH63057 | Soybean | nucleus | 19.35 | 21.82 |
| Solyc06g069240.1.1 | Tomato | nucleus | 20.28 | 21.67 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 14.75 | 21.55 |
| AT1G68800.2 | Thale cress | nucleus | 17.74 | 21.27 |
| PGSC0003DMT400014572 | Potato | nucleus | 18.43 | 21.16 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 17.28 | 21.01 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 17.97 | 20.53 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 17.05 | 20.22 |
| KRH54810 | Soybean | nucleus | 18.43 | 20.2 |
| Zm00001d013467_P001 | Maize | nucleus | 16.59 | 20.06 |
| Os03t0706500-01 | Rice | nucleus | 17.51 | 19.59 |
| AT1G67260.1 | Thale cress | nucleus | 13.82 | 16.71 |
| AT1G30210.1 | Thale cress | nucleus | 11.98 | 16.05 |
| AT4G18390.1 | Thale cress | nucleus | 11.52 | 13.7 |
| AT5G08070.1 | Thale cress | nucleus, plastid | 6.91 | 12.4 |
| AT2G31070.1 | Thale cress | nucleus | 9.91 | 11.91 |
| AT3G02150.2 | Thale cress | nucleus | 9.68 | 11.83 |
| AT5G60970.1 | Thale cress | nucleus | 9.45 | 11.39 |
| AT1G53230.1 | Thale cress | nucleus | 9.45 | 10.49 |
| AT3G15030.1 | Thale cress | nucleus | 9.45 | 9.76 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:821386 | UniProt:A0A1I9LSP1 | ProteinID:ANM65599.1 | ArrayExpress:AT3G18550 | EnsemblPlantsGene:AT3G18550 |
| RefSeq:AT3G18550 | TAIR:AT3G18550 | RefSeq:AT3G18550-TAIR-G | EnsemblPlants:AT3G18550.3 | Unigene:At.50196 | Symbol:BRC1 |
| InterPro:CYC/TB1_R_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR017887 | InterPro:IPR017888 | RefSeq:NP_001327556.1 | PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF41 | InterPro:TF_TCP_subgr | TMHMM:TMhelix | InterPro:Transcription_factor_TCP | UniParc:UPI000016344A |
| SEG:seg | : | : | : | : | : |
Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
Coordinates
chr3:+:6383289..6385815
Molecular Weight (calculated)
49656.6 Da
IEP (calculated)
8.199
GRAVY (calculated)
-0.795
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEVPY LYLRVTFIIF MSFFPMVLSK AIHS
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEVPY LYLRVTFIIF MSFFPMVLSK AIHS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.