Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G001900.1 | Wheat | nucleus | 86.78 | 93.77 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 80.68 | 90.15 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 83.73 | 83.17 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 43.39 | 36.16 |
| TraesCS2B01G025700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 18.98 | 27.45 |
| GSMUA_Achr2P21050_001 | Banana | mitochondrion | 21.69 | 24.52 |
| TraesCS5B01G205600.1 | Wheat | cytosol | 22.71 | 24.45 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 18.64 | 23.11 |
| PGSC0003DMT400010380 | Potato | nucleus | 21.69 | 22.94 |
| PGSC0003DMT400008673 | Potato | nucleus | 12.2 | 22.93 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 17.97 | 21.99 |
| Solyc03g045030.1.1 | Tomato | nucleus | 13.56 | 21.86 |
| GSMUA_Achr2P22480_001 | Banana | cytosol | 23.05 | 20.99 |
| CDX95517 | Canola | nucleus | 20.0 | 20.85 |
| CDY18525 | Canola | nucleus | 20.0 | 20.85 |
| Bra037579.1-P | Field mustard | nucleus | 20.0 | 20.7 |
| CDY33597 | Canola | nucleus | 22.37 | 20.43 |
| CDY45852 | Canola | nucleus | 22.37 | 19.88 |
| Bra038350.1-P | Field mustard | nucleus | 22.37 | 19.7 |
| CDX81550 | Canola | nucleus | 22.37 | 19.53 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 21.36 | 19.09 |
| KRH63057 | Soybean | nucleus | 24.75 | 18.96 |
| KRH56692 | Soybean | nucleus | 24.07 | 18.88 |
| KRH03810 | Soybean | nucleus | 24.07 | 18.68 |
| Solyc03g119770.2.1 | Tomato | nucleus | 21.69 | 18.5 |
| KRH54810 | Soybean | nucleus | 24.75 | 18.43 |
| PGSC0003DMT400019324 | Potato | nucleus | 23.39 | 18.11 |
| AT1G68800.2 | Thale cress | nucleus | 22.03 | 17.96 |
| Solyc04g006980.1.1 | Tomato | nucleus | 22.71 | 17.87 |
| Solyc06g069240.1.1 | Tomato | nucleus | 24.41 | 17.73 |
| KRH45185 | Soybean | plastid | 22.03 | 17.57 |
| KRH01497 | Soybean | plastid | 22.03 | 17.57 |
| PGSC0003DMT400014572 | Potato | nucleus | 22.37 | 17.46 |
| CDY12633 | Canola | nucleus | 18.98 | 17.39 |
| Solyc05g009900.1.1 | Tomato | nucleus | 20.68 | 17.28 |
| CDY46042 | Canola | nucleus | 20.0 | 17.05 |
| Bra034010.1-P | Field mustard | nucleus | 19.66 | 16.76 |
| Bra004212.1-P | Field mustard | nucleus | 19.32 | 16.72 |
| CDY01793 | Canola | nucleus | 20.0 | 16.71 |
| CDY62798 | Canola | nucleus | 23.05 | 16.55 |
| CDX96104 | Canola | nucleus | 19.66 | 16.52 |
| PGSC0003DMT400002153 | Potato | nucleus | 19.66 | 16.38 |
| CDX82339 | Canola | nucleus | 23.39 | 16.27 |
| Bra001710.1-P | Field mustard | nucleus | 23.39 | 16.24 |
| KRH35497 | Soybean | nucleus | 20.68 | 16.05 |
| AT1G67260.1 | Thale cress | nucleus | 19.32 | 15.88 |
| KRG93829 | Soybean | nucleus, plastid | 22.37 | 15.87 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 19.66 | 15.85 |
| KRH18263 | Soybean | plastid | 22.37 | 15.75 |
| KRG91334 | Soybean | nucleus | 20.0 | 15.73 |
| Bra004097.1-P | Field mustard | nucleus | 18.31 | 15.56 |
| CDY52898 | Canola | nucleus | 22.37 | 15.53 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 23.05 | 15.53 |
| AT3G18550.3 | Thale cress | nucleus | 22.71 | 15.44 |
| CDY07432 | Canola | nucleus | 18.31 | 15.34 |
| CDY28898 | Canola | nucleus | 17.97 | 14.97 |
| TraesCS3B01G333400.1 | Wheat | nucleus | 13.9 | 14.64 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 20.0 | 13.92 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 12.88 | 12.67 |
| TraesCS1B01G346300.1 | Wheat | nucleus | 12.88 | 12.34 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 16.27 | 11.88 |
| TraesCS3B01G164500.1 | Wheat | nucleus | 16.95 | 11.11 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G002300.1 | EnsemblPlantsGene:TraesCS5B01G002300 | InterPro:CYC/TB1_R_domain | InterPro:IPR017887 | InterPro:IPR017888 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | ncoils:Coil | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF39 | PFAM:PF03634 | PFscan:PS51369 |
| PFscan:PS51370 | SEG:seg | MapMan:15.5.19 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:3474782..3475669
Molecular Weight (calculated)
32649.5 Da
IEP (calculated)
9.841
GRAVY (calculated)
-0.806
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MMCELFRAQK EAARGREQEI VMEMDMGMDS LWPHHQHPPP PLPPSSEVPD AFSYYCYYPP FAAAAAAKAD NPSPPAVSRS RASRSRAVAR KDRHSKICTA
101: GGMRDRRMRL SLDVARRFFA LQDKLGFDKA SKTVQWLLDR STAGINHLAA SMSASMSLSE EDGDGSVLLD LDSNDHAKAM AADAETNKQQ EQEHQTAKAK
201: RRSAPAVPSP RKKSNNGGAP VLLPDKASRA RARERARERT KERNRLRSEA PEPAPAPARQ PVVPAAACSN NYYEEGEQEP WELGGVVFAK PRIKY
101: GGMRDRRMRL SLDVARRFFA LQDKLGFDKA SKTVQWLLDR STAGINHLAA SMSASMSLSE EDGDGSVLLD LDSNDHAKAM AADAETNKQQ EQEHQTAKAK
201: RRSAPAVPSP RKKSNNGGAP VLLPDKASRA RARERARERT KERNRLRSEA PEPAPAPARQ PVVPAAACSN NYYEEGEQEP WELGGVVFAK PRIKY
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
Arabidopsis Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.