Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038350.1-P | Field mustard | nucleus | 95.27 | 96.12 |
| CDY45852 | Canola | nucleus | 94.08 | 95.78 |
| AT1G68800.2 | Thale cress | nucleus | 73.37 | 68.51 |
| CDY33597 | Canola | nucleus | 64.2 | 67.18 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 33.43 | 25.8 |
| Solyc04g006980.1.1 | Tomato | nucleus | 26.63 | 24.0 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 18.64 | 23.86 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 19.23 | 23.81 |
| PGSC0003DMT400019324 | Potato | nucleus | 26.63 | 23.62 |
| Solyc05g009900.1.1 | Tomato | nucleus | 24.26 | 23.23 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 19.53 | 22.37 |
| PGSC0003DMT400002153 | Potato | nucleus | 23.37 | 22.32 |
| CDY18525 | Canola | nucleus | 18.05 | 21.55 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 18.93 | 21.55 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 21.01 | 21.52 |
| CDX95517 | Canola | nucleus | 17.46 | 20.85 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 21.89 | 20.73 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 21.3 | 20.34 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 21.01 | 20.17 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 21.01 | 20.17 |
| CDY01793 | Canola | nucleus | 20.41 | 19.55 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 21.89 | 19.47 |
| CDX96104 | Canola | nucleus | 20.12 | 19.37 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 20.71 | 19.13 |
| Os03t0706500-01 | Rice | nucleus | 21.89 | 19.07 |
| CDY52898 | Canola | nucleus | 23.96 | 19.06 |
| CDY07432 | Canola | nucleus | 19.82 | 19.03 |
| CDY12633 | Canola | nucleus | 18.05 | 18.94 |
| Zm00001d013467_P001 | Maize | nucleus | 20.12 | 18.94 |
| CDY28898 | Canola | nucleus | 19.82 | 18.93 |
| CDY62798 | Canola | nucleus | 22.78 | 18.73 |
| CDX82339 | Canola | nucleus | 23.08 | 18.4 |
| CDY46042 | Canola | nucleus | 18.05 | 17.63 |
| CDX99891 | Canola | nucleus | 15.68 | 16.72 |
| CDY26285 | Canola | nucleus | 15.68 | 16.67 |
| CDX90234 | Canola | nucleus | 14.5 | 15.91 |
| CDY59229 | Canola | nucleus | 14.5 | 15.65 |
| CDX78321 | Canola | nucleus, plastid | 10.95 | 15.04 |
| CDY60877 | Canola | nucleus | 15.68 | 14.8 |
| CDX81083 | Canola | nucleus, plastid | 10.65 | 14.75 |
| CDY55633 | Canola | nucleus | 15.98 | 14.14 |
| CDY20097 | Canola | nucleus | 14.5 | 13.73 |
| CDY01537 | Canola | nucleus | 12.43 | 13.68 |
| CDY02519 | Canola | nucleus | 13.91 | 13.66 |
| CDY68618 | Canola | nucleus, plastid | 11.83 | 13.24 |
| CDY68596 | Canola | cytosol, nucleus | 14.5 | 12.69 |
| CDY47005 | Canola | nucleus, plastid | 11.24 | 12.62 |
| CDX74272 | Canola | nucleus | 11.54 | 12.19 |
| CDX91977 | Canola | nucleus | 11.54 | 12.19 |
| CDX75802 | Canola | nucleus | 14.5 | 12.13 |
| CDX82453 | Canola | nucleus | 14.5 | 12.1 |
| CDY10772 | Canola | nucleus | 12.13 | 11.85 |
| CDY10771 | Canola | nucleus | 12.13 | 11.82 |
| CDY24724 | Canola | nucleus | 12.13 | 11.78 |
| CDY02180 | Canola | nucleus | 12.43 | 11.48 |
| CDY58696 | Canola | nucleus | 12.13 | 11.26 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 10.95 | 9.32 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 10.95 | 8.62 |
| CDX78849 | Canola | nucleus, plastid | 5.33 | 7.53 |
| CDX97627 | Canola | mitochondrion | 2.66 | 3.28 |
Protein Annotations
| EnsemblPlants:CDX81550 | EnsemblPlantsGene:GSBRNA2T00135251001 | InterPro:CYC/TB1_R_domain | InterPro:IPR017887 | InterPro:IPR017888 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF22 | PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 |
| ProteinID:CDX81550 | ProteinID:CDX81550.1 | SEG:seg | UniParc:UPI0004EEB480 | MapMan:15.5.19 | : |
Description
BnaC02g18540D
Coordinates
chrLK031825:-:1345681..1346801
Molecular Weight (calculated)
38280.9 Da
IEP (calculated)
8.605
GRAVY (calculated)
-0.841
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPSIDTNGH DLFDPFNLHE ATMFPSFTTH ILSPSSHHHY PFPSFPSSSD FLDESVLISQ FLLQQQANVD SPRKLCKELE QEKKNEEWVD GTTSEKVSPR
101: RTGKKRDRHS KICTAHGPRD RRMRLSLQIA RKFFDLQDML GFDKASKTIE WLISKSKASI KQVKESAAAA ASGNHEHLQV SDNVNDKTQK VSKGRTKRVD
201: DSCKKKESRE KARERARERT MTKMKMRLSG PIDTSKTFAD PNQESRKTKI TGGAQVEGEN LEQERSIIEK FLGLTSESSS STIFGDSEES YTSLGSIRET
301: VSTGGMVIPR EHNTTLTASV DEERNPISTF SLYDYLCY
101: RTGKKRDRHS KICTAHGPRD RRMRLSLQIA RKFFDLQDML GFDKASKTIE WLISKSKASI KQVKESAAAA ASGNHEHLQV SDNVNDKTQK VSKGRTKRVD
201: DSCKKKESRE KARERARERT MTKMKMRLSG PIDTSKTFAD PNQESRKTKI TGGAQVEGEN LEQERSIIEK FLGLTSESSS STIFGDSEES YTSLGSIRET
301: VSTGGMVIPR EHNTTLTASV DEERNPISTF SLYDYLCY
001: MFPSLDTNGY DLFDPFIPHQ TTMFPSFITH IQSPNSHHHY SSPSFPFSSD FLESFDESFL INQFLLQQQD VAANVVESPW KFCKKLELKK KNEKCVDGST
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY
Arabidopsis Description
BRC2TCP domain protein 12 [Source:TAIR;Acc:AT1G68800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.