Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G040100.1 | Wheat | nucleus | 96.31 | 96.31 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 96.02 | 95.48 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 89.77 | 88.52 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 62.22 | 57.63 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 59.09 | 56.83 |
| Os03t0706500-01 | Rice | nucleus | 62.5 | 56.7 |
| Zm00001d013467_P001 | Maize | nucleus | 55.68 | 54.6 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 36.08 | 46.52 |
| TraesCS2A01G018000.1 | Wheat | cytosol | 18.75 | 32.35 |
| TraesCS5A01G207300.1 | Wheat | cytosol | 23.3 | 30.15 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 18.47 | 27.31 |
| GSMUA_Achr2P21050_001 | Banana | mitochondrion | 20.17 | 27.2 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 17.9 | 26.14 |
| PGSC0003DMT400010380 | Potato | nucleus | 20.45 | 25.81 |
| PGSC0003DMT400008673 | Potato | nucleus | 10.8 | 24.2 |
| Solyc03g045030.1.1 | Tomato | nucleus | 12.22 | 23.5 |
| GSMUA_Achr2P22480_001 | Banana | cytosol | 21.59 | 23.46 |
| CDY33597 | Canola | nucleus | 20.45 | 22.29 |
| CDX95517 | Canola | nucleus | 17.9 | 22.26 |
| CDY18525 | Canola | nucleus | 17.9 | 22.26 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 20.74 | 22.12 |
| Bra037579.1-P | Field mustard | nucleus | 17.9 | 22.11 |
| KRH45185 | Soybean | plastid | 22.44 | 21.35 |
| KRH03810 | Soybean | nucleus | 23.01 | 21.32 |
| KRH56692 | Soybean | nucleus | 22.73 | 21.28 |
| CDY45852 | Canola | nucleus | 19.89 | 21.08 |
| CDX81550 | Canola | nucleus | 20.17 | 21.01 |
| Bra038350.1-P | Field mustard | nucleus | 19.89 | 20.9 |
| KRH01497 | Soybean | plastid | 21.88 | 20.81 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 20.74 | 19.95 |
| CDY01793 | Canola | nucleus | 19.89 | 19.83 |
| CDY12633 | Canola | nucleus | 17.9 | 19.57 |
| Solyc06g069240.1.1 | Tomato | nucleus | 22.44 | 19.46 |
| Solyc04g006980.1.1 | Tomato | nucleus | 20.45 | 19.2 |
| PGSC0003DMT400019324 | Potato | nucleus | 20.74 | 19.16 |
| Solyc03g119770.2.1 | Tomato | nucleus | 18.75 | 19.08 |
| AT1G68800.2 | Thale cress | nucleus | 19.6 | 19.06 |
| KRH63057 | Soybean | nucleus | 20.74 | 18.96 |
| AT1G67260.1 | Thale cress | nucleus | 19.32 | 18.94 |
| CDX96104 | Canola | nucleus | 18.75 | 18.8 |
| CDY46042 | Canola | nucleus | 18.47 | 18.79 |
| PGSC0003DMT400014572 | Potato | nucleus | 20.17 | 18.78 |
| Bra004212.1-P | Field mustard | nucleus | 18.18 | 18.77 |
| KRG93829 | Soybean | nucleus, plastid | 21.88 | 18.51 |
| KRH35497 | Soybean | nucleus | 19.89 | 18.42 |
| KRG91334 | Soybean | nucleus | 19.6 | 18.4 |
| Bra034010.1-P | Field mustard | nucleus | 17.9 | 18.21 |
| KRH54810 | Soybean | nucleus | 20.45 | 18.18 |
| CDX82339 | Canola | nucleus | 21.88 | 18.16 |
| KRH18263 | Soybean | plastid | 21.59 | 18.14 |
| CDY52898 | Canola | nucleus | 21.88 | 18.12 |
| Bra001710.1-P | Field mustard | nucleus | 21.88 | 18.12 |
| AT3G18550.3 | Thale cress | nucleus | 22.16 | 17.97 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 22.16 | 17.81 |
| CDY62798 | Canola | nucleus | 20.74 | 17.76 |
| CDY07432 | Canola | nucleus | 17.61 | 17.61 |
| CDY28898 | Canola | nucleus | 17.33 | 17.23 |
| Bra004097.1-P | Field mustard | nucleus | 16.76 | 17.0 |
| Solyc05g009900.1.1 | Tomato | nucleus | 17.05 | 17.0 |
| PGSC0003DMT400002153 | Potato | nucleus | 16.48 | 16.38 |
| TraesCS3A01G302900.1 | Wheat | nucleus | 11.36 | 14.39 |
| TraesCS5A01G423900.1 | Wheat | cytosol | 15.62 | 13.58 |
| TraesCS5A01G031900.1 | Wheat | nucleus | 11.36 | 13.47 |
| TraesCS3A01G140100.1 | Wheat | nucleus | 15.91 | 12.25 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 17.61 | 11.31 |
| TraesCS1A01G332600.1 | Wheat | nucleus | 9.66 | 11.11 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G271300.1 | EnsemblPlantsGene:TraesCS4A01G271300 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0048831 | InterPro:CYC/TB1_R_domain |
| InterPro:IPR017887 | InterPro:IPR017888 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF39 |
| PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr4A:-:582839931..582840989
Molecular Weight (calculated)
37937.5 Da
IEP (calculated)
7.660
GRAVY (calculated)
-0.629
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPFYDSPSP MDLPLYQQLQ ISPPSPKAPD HQSLLYYHSS PAFAADAFHH SYLCAGAATP PAAEIDNQPP PELLLMDQAP APRADGVGTA QGLHGGGGLD
101: SAAAAAARKD RHSKICTAGG MRDRRMRLSL DVARKFFALQ DMLGFDKASK TVQWLLNTSK GAIREVMTDE ASSDCEEDGS SSLSVVDGKH KPPGTEAGGG
201: DHGEGKKPMP RAARRAPANP KPQRKLASAH PIPDKESRTK ARERARERTR EKNRMRWVTL ASTINIEPAA TGMAAARADE LITRPHNFIN RSSSMNTASA
301: ELEEGCSSSM PSEAIVAGFG NGGYGSSGNY YQYQLEQQWE LAGVVFPNSQ PY
101: SAAAAAARKD RHSKICTAGG MRDRRMRLSL DVARKFFALQ DMLGFDKASK TVQWLLNTSK GAIREVMTDE ASSDCEEDGS SSLSVVDGKH KPPGTEAGGG
201: DHGEGKKPMP RAARRAPANP KPQRKLASAH PIPDKESRTK ARERARERTR EKNRMRWVTL ASTINIEPAA TGMAAARADE LITRPHNFIN RSSSMNTASA
301: ELEEGCSSSM PSEAIVAGFG NGGYGSSGNY YQYQLEQQWE LAGVVFPNSQ PY
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
Arabidopsis Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.