Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G025700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 92.65 | 92.65 |
| TraesCS2D01G019300.1 | Wheat | extracellular | 94.12 | 81.36 |
| EES13882 | Sorghum | cytosol | 55.39 | 43.97 |
| Zm00001d032217_P001 | Maize | cytosol | 51.47 | 43.75 |
| Os08t0432300-00 | Rice | nucleus | 56.37 | 38.85 |
| Zm00001d050389_P001 | Maize | nucleus | 51.96 | 38.69 |
| TraesCS5A01G207300.1 | Wheat | cytosol | 40.69 | 30.51 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 27.45 | 20.51 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 32.35 | 18.75 |
| TraesCS3A01G302900.1 | Wheat | nucleus | 19.12 | 14.03 |
| TraesCS1A01G332600.1 | Wheat | nucleus | 20.59 | 13.73 |
| TraesCS5A01G031900.1 | Wheat | nucleus | 19.12 | 13.13 |
| TraesCS5A01G423900.1 | Wheat | cytosol | 24.02 | 12.1 |
| TraesCS3A01G140100.1 | Wheat | nucleus | 20.59 | 9.19 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 23.04 | 8.58 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G018000.1 | EnsemblPlantsGene:TraesCS2A01G018000 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF68 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr2A:+:8543322..8544265
Molecular Weight (calculated)
22142.0 Da
IEP (calculated)
5.357
GRAVY (calculated)
-0.549
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPAPSSFGE CFQFFPAEMY HHHQQQLLLQ EEGTLEAVLW QPVTAPAPAE RGEPGNNGAP GGAVVGAARK RPFRTDRHSK IRTAQGVRDR RMRLSVGVAR
101: EFFALQDLLG FDKASKTVEW LLTQSKPAID RLANETQGGA AAAAAGPLKE KGEGATSSST GRFEDAREEE HDVRDLMKSI GGEGELDWFM SEAAAIGQPM
201: EGLD
101: EFFALQDLLG FDKASKTVEW LLTQSKPAID RLANETQGGA AAAAAGPLKE KGEGATSSST GRFEDAREEE HDVRDLMKSI GGEGELDWFM SEAAAIGQPM
201: EGLD
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
Arabidopsis Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.