Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5D01G002300.1 | Wheat | nucleus | 86.08 | 89.02 |
TraesCS5B01G002300.1 | Wheat | nucleus | 93.77 | 86.78 |
HORVU5Hr1G000490.1 | Barley | nucleus | 89.38 | 82.15 |
TraesCS4A01G271300.1 | Wheat | nucleus | 46.52 | 36.08 |
TraesCS2A01G018000.1 | Wheat | cytosol | 20.51 | 27.45 |
TraesCS5A01G207300.1 | Wheat | cytosol | 24.54 | 24.63 |
GSMUA_Achr2P21050_001 | Banana | mitochondrion | 23.44 | 24.52 |
PGSC0003DMT400010380 | Potato | nucleus | 23.44 | 22.94 |
PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 19.78 | 22.69 |
PGSC0003DMT400008673 | Potato | nucleus | 12.82 | 22.29 |
Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 19.05 | 21.58 |
Solyc03g045030.1.1 | Tomato | nucleus | 14.29 | 21.31 |
GSMUA_Achr2P22480_001 | Banana | cytosol | 24.91 | 20.99 |
CDY18525 | Canola | nucleus | 21.61 | 20.85 |
CDX95517 | Canola | nucleus | 21.61 | 20.85 |
Bra037579.1-P | Field mustard | nucleus | 21.61 | 20.7 |
CDY33597 | Canola | nucleus | 23.81 | 20.12 |
CDY45852 | Canola | nucleus | 23.81 | 19.58 |
Bra038350.1-P | Field mustard | nucleus | 23.81 | 19.4 |
CDX81550 | Canola | nucleus | 23.81 | 19.23 |
KRH56692 | Soybean | nucleus | 26.01 | 18.88 |
VIT_14s0083g00150.t01 | Wine grape | nucleus | 22.71 | 18.79 |
KRH63057 | Soybean | nucleus | 26.37 | 18.7 |
KRH03810 | Soybean | nucleus | 26.01 | 18.68 |
Solyc03g119770.2.1 | Tomato | nucleus | 23.08 | 18.21 |
KRH54810 | Soybean | nucleus | 26.37 | 18.18 |
PGSC0003DMT400019324 | Potato | nucleus | 24.91 | 17.85 |
Solyc04g006980.1.1 | Tomato | nucleus | 24.18 | 17.6 |
Solyc06g069240.1.1 | Tomato | nucleus | 26.01 | 17.49 |
AT1G68800.2 | Thale cress | nucleus | 23.08 | 17.4 |
Solyc05g009900.1.1 | Tomato | nucleus | 22.34 | 17.28 |
PGSC0003DMT400014572 | Potato | nucleus | 23.81 | 17.2 |
CDY12633 | Canola | nucleus | 20.15 | 17.08 |
KRH01497 | Soybean | plastid | 23.08 | 17.03 |
KRH45185 | Soybean | plastid | 23.08 | 17.03 |
CDY46042 | Canola | nucleus | 21.25 | 16.76 |
Bra034010.1-P | Field mustard | nucleus | 20.88 | 16.47 |
Bra004212.1-P | Field mustard | nucleus | 20.51 | 16.42 |
PGSC0003DMT400002153 | Potato | nucleus | 21.25 | 16.38 |
CDY62798 | Canola | nucleus | 24.54 | 16.3 |
CDX96104 | Canola | nucleus | 20.88 | 16.24 |
CDY01793 | Canola | nucleus | 20.88 | 16.15 |
KRH35497 | Soybean | nucleus | 22.34 | 16.05 |
CDX82339 | Canola | nucleus | 24.91 | 16.04 |
KRG91334 | Soybean | nucleus | 21.98 | 16.0 |
Bra001710.1-P | Field mustard | nucleus | 24.91 | 16.0 |
KRG93829 | Soybean | nucleus, plastid | 23.81 | 15.62 |
VIT_17s0000g04180.t01 | Wine grape | nucleus | 20.88 | 15.57 |
VIT_01s0011g02920.t01 | Wine grape | nucleus | 24.91 | 15.53 |
KRH18263 | Soybean | plastid | 23.81 | 15.51 |
AT1G67260.1 | Thale cress | nucleus | 20.15 | 15.32 |
CDY52898 | Canola | nucleus | 23.81 | 15.29 |
Bra004097.1-P | Field mustard | nucleus | 19.41 | 15.27 |
AT3G18550.3 | Thale cress | nucleus | 24.18 | 15.21 |
CDY07432 | Canola | nucleus | 19.41 | 15.06 |
TraesCS3A01G302900.1 | Wheat | nucleus | 15.02 | 14.75 |
CDY28898 | Canola | nucleus | 19.05 | 14.69 |
TraesCS1A01G332600.1 | Wheat | nucleus | 13.92 | 12.42 |
TraesCS5A01G031900.1 | Wheat | nucleus | 13.19 | 12.12 |
TraesCS5A01G423900.1 | Wheat | cytosol | 17.22 | 11.6 |
TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 21.25 | 10.58 |
TraesCS3A01G140100.1 | Wheat | nucleus | 17.22 | 10.28 |
Protein Annotations
EnsemblPlants:TraesCS5A01G001900.1 | EnsemblPlantsGene:TraesCS5A01G001900 | InterPro:CYC/TB1_R_domain | InterPro:IPR017887 | InterPro:IPR017888 | InterPro:TF_TCP_subgr |
InterPro:Transcription_factor_TCP | ncoils:Coil | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF39 | PFAM:PF03634 | PFscan:PS51369 |
PFscan:PS51370 | SEG:seg | MapMan:15.5.19 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:1346665..1347486
Molecular Weight (calculated)
30076.3 Da
IEP (calculated)
9.886
GRAVY (calculated)
-0.767
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMEMGMDSL WPHHQHPPPL PPSSEVPDAF SSYYYYPPLA AAAAAAATTD NPTPPAVSRS RASRSRAAAR KDRHSKICTA GGMRDRRMRL SLDVARRFFA
101: LQDKLGFDKA SKTVQWLLDR STAGINHLAA SMSASMSLSE EDVDGSVLLD LDNNDHAMAM AADAETNKQQ EQEHQTAKAK RRSAPAVPSP RKKSSNGSAP
201: VLLPDKASRA RARERARERT KERNRLRSEA PAPAPARQPV VPAVTCSNNY YEEGEQEPWE LGGVVFAKPR IQY
101: LQDKLGFDKA SKTVQWLLDR STAGINHLAA SMSASMSLSE EDVDGSVLLD LDNNDHAMAM AADAETNKQQ EQEHQTAKAK RRSAPAVPSP RKKSSNGSAP
201: VLLPDKASRA RARERARERT KERNRLRSEA PAPAPARQPV VPAVTCSNNY YEEGEQEPWE LGGVVFAKPR IQY
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEVPY LYLRVTFIIF MSFFPMVLSK AIHS
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEVPY LYLRVTFIIF MSFFPMVLSK AIHS
Arabidopsis Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.