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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G002300.1 Wheat nucleus 86.08 89.02
TraesCS5B01G002300.1 Wheat nucleus 93.77 86.78
HORVU5Hr1G000490.1 Barley nucleus 89.38 82.15
TraesCS4A01G271300.1 Wheat nucleus 46.52 36.08
TraesCS2A01G018000.1 Wheat cytosol 20.51 27.45
TraesCS5A01G207300.1 Wheat cytosol 24.54 24.63
GSMUA_Achr2P21050_001 Banana mitochondrion 23.44 24.52
PGSC0003DMT400010380 Potato nucleus 23.44 22.94
PGSC0003DMT400026037 Potato cytosol, nucleus, plastid 19.78 22.69
PGSC0003DMT400008673 Potato nucleus 12.82 22.29
Solyc02g089830.1.1 Tomato cytosol, nucleus, plastid 19.05 21.58
Solyc03g045030.1.1 Tomato nucleus 14.29 21.31
GSMUA_Achr2P22480_001 Banana cytosol 24.91 20.99
CDY18525 Canola nucleus 21.61 20.85
CDX95517 Canola nucleus 21.61 20.85
Bra037579.1-P Field mustard nucleus 21.61 20.7
CDY33597 Canola nucleus 23.81 20.12
CDY45852 Canola nucleus 23.81 19.58
Bra038350.1-P Field mustard nucleus 23.81 19.4
CDX81550 Canola nucleus 23.81 19.23
KRH56692 Soybean nucleus 26.01 18.88
VIT_14s0083g00150.t01 Wine grape nucleus 22.71 18.79
KRH63057 Soybean nucleus 26.37 18.7
KRH03810 Soybean nucleus 26.01 18.68
Solyc03g119770.2.1 Tomato nucleus 23.08 18.21
KRH54810 Soybean nucleus 26.37 18.18
PGSC0003DMT400019324 Potato nucleus 24.91 17.85
Solyc04g006980.1.1 Tomato nucleus 24.18 17.6
Solyc06g069240.1.1 Tomato nucleus 26.01 17.49
AT1G68800.2 Thale cress nucleus 23.08 17.4
Solyc05g009900.1.1 Tomato nucleus 22.34 17.28
PGSC0003DMT400014572 Potato nucleus 23.81 17.2
CDY12633 Canola nucleus 20.15 17.08
KRH01497 Soybean plastid 23.08 17.03
KRH45185 Soybean plastid 23.08 17.03
CDY46042 Canola nucleus 21.25 16.76
Bra034010.1-P Field mustard nucleus 20.88 16.47
Bra004212.1-P Field mustard nucleus 20.51 16.42
PGSC0003DMT400002153 Potato nucleus 21.25 16.38
CDY62798 Canola nucleus 24.54 16.3
CDX96104 Canola nucleus 20.88 16.24
CDY01793 Canola nucleus 20.88 16.15
KRH35497 Soybean nucleus 22.34 16.05
CDX82339 Canola nucleus 24.91 16.04
KRG91334 Soybean nucleus 21.98 16.0
Bra001710.1-P Field mustard nucleus 24.91 16.0
KRG93829 Soybean nucleus, plastid 23.81 15.62
VIT_17s0000g04180.t01 Wine grape nucleus 20.88 15.57
VIT_01s0011g02920.t01 Wine grape nucleus 24.91 15.53
KRH18263 Soybean plastid 23.81 15.51
AT1G67260.1 Thale cress nucleus 20.15 15.32
CDY52898 Canola nucleus 23.81 15.29
Bra004097.1-P Field mustard nucleus 19.41 15.27
AT3G18550.3 Thale cress nucleus 24.18 15.21
CDY07432 Canola nucleus 19.41 15.06
TraesCS3A01G302900.1 Wheat nucleus 15.02 14.75
CDY28898 Canola nucleus 19.05 14.69
TraesCS1A01G332600.1 Wheat nucleus 13.92 12.42
TraesCS5A01G031900.1 Wheat nucleus 13.19 12.12
TraesCS5A01G423900.1 Wheat cytosol 17.22 11.6
TraesCS2A01G251100.1 Wheat plastid, vacuole 21.25 10.58
TraesCS3A01G140100.1 Wheat nucleus 17.22 10.28
Protein Annotations
EnsemblPlants:TraesCS5A01G001900.1EnsemblPlantsGene:TraesCS5A01G001900InterPro:CYC/TB1_R_domainInterPro:IPR017887InterPro:IPR017888InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCPncoils:CoilPANTHER:PTHR31072PANTHER:PTHR31072:SF39PFAM:PF03634PFscan:PS51369
PFscan:PS51370SEG:segMapMan:15.5.19:::
Description
No Description!
Coordinates
chr5A:-:1346665..1347486
Molecular Weight (calculated)
30076.3 Da
IEP (calculated)
9.886
GRAVY (calculated)
-0.767
Length
273 amino acids
Sequence
(BLAST)
001: MEMEMGMDSL WPHHQHPPPL PPSSEVPDAF SSYYYYPPLA AAAAAAATTD NPTPPAVSRS RASRSRAAAR KDRHSKICTA GGMRDRRMRL SLDVARRFFA
101: LQDKLGFDKA SKTVQWLLDR STAGINHLAA SMSASMSLSE EDVDGSVLLD LDNNDHAMAM AADAETNKQQ EQEHQTAKAK RRSAPAVPSP RKKSSNGSAP
201: VLLPDKASRA RARERARERT KERNRLRSEA PAPAPARQPV VPAVTCSNNY YEEGEQEPWE LGGVVFAKPR IQY
Best Arabidopsis Sequence Match ( AT3G18550.3 )
(BLAST)
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEVPY LYLRVTFIIF MSFFPMVLSK AIHS
Arabidopsis Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.