Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G298900.1 | Wheat | nucleus | 97.48 | 98.55 |
| HORVU3Hr1G073830.1 | Barley | nucleus | 97.48 | 97.48 |
| TraesCS3B01G333400.1 | Wheat | nucleus | 97.48 | 96.79 |
| Os01t0763200-01 | Rice | cytosol | 74.82 | 67.75 |
| Zm00001d043368_P001 | Maize | cytosol | 68.7 | 67.49 |
| EES03657 | Sorghum | nucleus | 67.99 | 65.4 |
| TraesCS1A01G332600.1 | Wheat | nucleus | 53.6 | 48.69 |
| Solyc02g065800.1.1 | Tomato | cytosol, plastid | 24.1 | 47.18 |
| PGSC0003DMT400068332 | Potato | cytosol, nucleus, peroxisome, plastid | 28.06 | 35.78 |
| PGSC0003DMT400003453 | Potato | nucleus, plastid | 32.37 | 31.8 |
| Solyc02g089020.1.1 | Tomato | nucleus, plastid | 31.3 | 30.63 |
| VIT_14s0068g00330.t01 | Wine grape | nucleus | 35.97 | 28.65 |
| KRH45058 | Soybean | nucleus | 35.97 | 28.17 |
| KRG93654 | Soybean | nucleus | 35.61 | 26.47 |
| CDX91977 | Canola | nucleus | 30.22 | 26.25 |
| CDX74272 | Canola | nucleus | 30.22 | 26.25 |
| Bra039158.1-P | Field mustard | nucleus | 28.42 | 25.57 |
| KRH01308 | Soybean | cytosol | 34.89 | 25.26 |
| AT3G02150.2 | Thale cress | nucleus | 29.14 | 22.82 |
| TraesCS5A01G031900.1 | Wheat | nucleus | 21.58 | 20.2 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 28.78 | 20.15 |
| TraesCS2A01G018000.1 | Wheat | cytosol | 14.03 | 19.12 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 28.42 | 18.41 |
| TraesCS5A01G423900.1 | Wheat | cytosol | 25.18 | 17.28 |
| Bra001032.1-P | Field mustard | nucleus | 29.5 | 15.24 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 14.75 | 15.02 |
| TraesCS5A01G207300.1 | Wheat | cytosol | 14.39 | 14.71 |
| TraesCS3A01G140100.1 | Wheat | nucleus | 23.74 | 14.44 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 27.7 | 14.05 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 14.39 | 11.36 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G302900.1 | EnsemblPlantsGene:TraesCS3A01G302900 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF67 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr3A:+:536896430..536897266
Molecular Weight (calculated)
30161.3 Da
IEP (calculated)
7.561
GRAVY (calculated)
-0.480
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSGNTQQQQ SAAAAEEEQE LARKHAAAVA TSRQWSSQTE SRIVRVSRVF GGKDRHSKVK TVKGLRDRRV RLSVQTAIQL YDLQDRLGLN QPSKVVDWLL
101: NAARHEIDKL PPLQFPPHQV DLMDHMMTSS SMPLMPHVDD KFCHFASTLA GDGGVKAGAD ADGDGAHHNM GRFGYHRFMG LNNNSLGLVN SGMPYNFTGE
201: SWNNSSVHQS GGAGSPQVSI AAAAAAHHSA FPSLLSLAPR SHQLVYYSSE ADQFPVDDLG SQSLSLSSAR AFHDQTGS
101: NAARHEIDKL PPLQFPPHQV DLMDHMMTSS SMPLMPHVDD KFCHFASTLA GDGGVKAGAD ADGDGAHHNM GRFGYHRFMG LNNNSLGLVN SGMPYNFTGE
201: SWNNSSVHQS GGAGSPQVSI AAAAAAHHSA FPSLLSLAPR SHQLVYYSSE ADQFPVDDLG SQSLSLSSAR AFHDQTGS
001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
Arabidopsis Description
TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.